instruct.yulab.org
INstruct: a database of 3D protein interactome networks with structural resolution
http://instruct.yulab.org/about.html
A database of 3D protein interactome networks with structural resolution. A paper describing INstruct is published in Bioinformatics. For each species, to construct a protein interactome network with structural resolution, we first compiled a list of high-quality binary interactions extracted from high-throughput, high-quality yeast two-hybrid (Y2H) assays and from eight major protein-protein interaction databases: BioGrid. Release of December 2011) or iPfam. Release 21). The set of Pfam domains on p...
interactome3d.irbbarcelona.org
Interactome3D - Results
http://interactome3d.irbbarcelona.org/results.php?queryid=bsubtilis
Results for dataset: Bacillus subtilis. Query interactions with proteins. Enter a list of Uniprot ACs:. For example. A0A5B9 P01848 A0AQH0 O61443. Number of unique interactions. With an experimental structure. With a model (generic PDB template). With a model (domain-domain template from 3did. Total with structural data (structure or model). Available for docking (see help. Number of unique proteins in interactome. With a complete exp. structure. With a complete homolgy model. Browse by GO term.
interactome3d.irbbarcelona.org
Interactome3D - Help
http://interactome3d.irbbarcelona.org/help.php
Format of the downloadable files. Here you can find a series of very short video tutorials that will guide you through the basic functionalities of the Interactome3D web service. Submit your data and check the results. Browse Interactome3D pre-built datasets. Query with a list of proteins. You can also follow our step-by-step tutorials:. Submit your data and check the results. Browse Interactome3D pre-built datasets. Query Interactome3D with a list of proteins. Page displays details about the protein, in...
oxfordjournals.org
Oxford Journals | Life Sciences | Nucleic Acids Research | Database Summary Paper Alpha List
http://www.oxfordjournals.org/nar/database/a
Database Summary Paper Alpha List. NAR Database Summary Paper Alphabetic List. 1000 Genomes Selection Browser. Engelken, Johannes; Pybus, Marc; Dall'Olio, Giovanni; Luisi, Pierre; Uzkudun, Manu; Carreño-Torres, Angel; Pavlidis, Pavlos; Laayouni, Hafid; Bertranpetit, Jaume. Signature of selection in the human genomes. 16S and 23S Ribosomal RNA Mutation Database. 16S and 23S ribosomal RNA mutations. Proteome database system for microbial research. 3D rRNA modification maps. 3DID - 3D interacting domains.
sbnb.irbbarcelona.org
News and Events | Structural Bioinformatics and Network Biology Group
http://sbnb.irbbarcelona.org/news
Skip to main content. DSysMap: mapping mutations on the human structural interactome. DSysMap (which stands for Disease-mutations Systemic Mapping ) is a computational tool to interpret the effect of genetic mutations on the development of complex diseases by mapping them to the human structural interactome. dSysMap allows to display mutations in the systemic context of the human interactome and to identify their potential "edgetic" effects. A Proteome-Scale Map of the Human Interactome Network. Research...
sbnb.irbbarcelona.org
3did: a catalogue of domain-based interactions of known three-dimensional structure | Structural Bioinformatics and Network Biology Group
http://sbnb.irbbarcelona.org/3did_2013
Skip to main content. 3did: a catalogue of domain-based interactions of known three-dimensional structure. Stein A, Olivella R. Nucleic Acids Research, 2014. 42 (D1), D374-D379. The database of three-dimensional (3D) interacting domains (3did, available online for browsing and bulk download at http:/ 3did.irbbarcelona.org. Direct link: 10.1093/nar/gkt887. Last updated 03 May 2016 10:39 am.
sbnb.irbbarcelona.org
Resources | Structural Bioinformatics and Network Biology Group
http://sbnb.irbbarcelona.org/resources
Skip to main content. Our webservers and other resources. The database of three-dimensional interacting domains. 3did) is a collection of protein interactions for which high-resolution three-dimensional structures. Are known. 3did exploits the a availability of structural data to provide molecular details on interactions between two globular domains as well as novel domain peptide interactions. The complex nature of biological systems requires intricate networks of protein-protein interactions that coord...
bioinformatictools.blogspot.com
Bioinformatics Tools: In-silico Binding Site Prediction in Proteins
http://bioinformatictools.blogspot.com/2012/02/in-silico-binding-site-prediction-in.html
Bioinformatics has evolved as a great tool for molecular biologists. There are various tools available for helping in reducing the time required to analyze biological materials be it DNA, RNA, Proteins etc. I wish to list here few of the commonly used tools. Please send me suggestions to improve the content. If you like or dislike something, let me know, your inputs matters. contact me: drsanjivk[at]gmail[dot]com. Sunday, February 26, 2012. In-silico Binding Site Prediction in Proteins. Is a meta server ...
