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BFG@University of Richmond: October 2005

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Monday, October 17, 2005. An interesting new take on the bioinformatics/functional genomics story is nutritional genomics (nutrigenomics). It's the study of how our genes affect our health and nutritional requirements. As you can imagine, this research has tremendous upside, but it is clear that one must view this research with healthy skepticism (no pun intended). Posted by Joe Gindhart @ 2:57 PM. Wednesday, October 12, 2005. Finding mutations in FlyBase. There are a number of ways:. Posted by Joe Gindh...

BFG@University of Richmond: ab initio protein structure prediction

http://bfgur.blogspot.com/2005/11/ab-initio-protein-structure-prediction.html

Friday, November 04, 2005. Ab initio protein structure prediction. The "holy grail" of structural genomics is ab initio protein structure prediction; i.e., the ability to reliably predict tertiary structure from primary sequence. There are structure comparison "engines" and databases such as FATCAT. Page However, there are not too many ab initio sites for predicting tertiary. Structure viewer. Here's a link. To my results for the first TPR repeat of Drosophila. Posted by Joe Gindhart @ 6:18 AM.

BFG@University of Richmond: August 2005

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Monday, August 29, 2005. First day of class. Posted by Joe Gindhart @ 2:10 PM. Wednesday, August 17, 2005. The first lecture is Monday, August 29. Posted by Joe Gindhart @ 2:15 PM. Wednesday, August 03, 2005. Biol 351-Bioinformatics and Functional Genomics. Welcome to the course blog for Biology 351 at the University of Richmond. This course about bioinformatics and functional genomics will be taught during the fall 2005 semester, which begins in four (! Posted by Joe Gindhart @ 5:48 PM.

BFG@University of Richmond: Protein Analysis of Beta-Hexosaminidase A

http://bfgur.blogspot.com/2005/11/protein-analysis-of-beta.html

Wednesday, November 02, 2005. Protein Analysis of Beta-Hexosaminidase A. BLAST search identifies the human HEXA protein product (NCBI P06865) as a member of the single domain family 'Glycosal hydrolase family 20,' with a catalytic domain identified (aa's 167-488) containing a TIM barrel, and 'domain 2' (aa's 35-165) containing a zincin like fold: NCBI. Unprocessed precursor aa length = 529, MW = 60,689 Da. Beta-N-acetylhexosaminidase A activity, hydrolase activity, acting on glycosyl bonds (EBI InterPr.

BFG@University of Richmond: September 2005

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Friday, September 30, 2005. A common parasite infecting sheep and goats,. Sequencing by the Wellcome Trust Sanger Institute. Blast results (blastx): kinesin family members present. Blast results (blastx): kinesin family members present. Blast results (blastx): kinesin family members present. Blast results (blastx): kinesin family members present. Blast results (blastx): kinesin family members present. Blast results (blastx): kinesin family members present. Posted by Chris Wellington @ 8:09 AM. A tblastn ...