big.crg.cat
Services and software | Bioinformatics and Genomics @ CRG
http://big.crg.cat/services_and_software
Gene function and evolution. Genetic causes of disease. Here a description of the diferent available services. Grape is a pipeline for processing and analyzing RNA-Seq data. High throughput sequencing technologies generate vast amounts of data that require subsequent management, analysis and visualization. The Grape RNAseq Analysis Pipeline Environment. Implements a set of workflows that allow for easy exploration of RNA-Seq. Data Among other features, it enables the users to perform. To give you a previ...
hackathon3.dbcls.jp
Participants – BioHackathon 2010
http://hackathon3.dbcls.jp/wiki/Participants
Concept Web Alliance (CWA); Austria). NNF Center for Protein Research, Denmark). Venkata P. Satagopam. TU Dortmund, Germany). Text mining; Manchester U, UK). Genome Canada Bioinformatics Platform, Canada). Genome Canada Bioinformatics Platform, Canada). Manchester U, UK, Genome Canada Bioinformatics Platform, Canada ). PSIQUIC; EBI, UK). Emory Univ, US). U Cambridge, UK). University of Reading, UK). Burnham Institute, US). Raoul Jean Pierre Bonnal. Fondazione INGM, Italy). Mass General Hospital, US).
gabipd.org
GABI Primary Database ( GabiPD ) - Genomanalyse im biologischen System Pflanze
http://www.gabipd.org/news.shtml
Genome annotation for Brassica rapa (the "A" genome component of the amphidiploid rapeseed species B. napus) inserted (05-JAN-13). 149; Brassica rapa genome annotation v1.2. From Phytozome v9.0. Was integrated into GabiPD, including gene structures. 149; Please find the data via GreenCards. With the keyword "BRA0*" or initiate a blast run. 149; Gene structures are visualized in the cDNA display of every Gene GreenCard. New poplar genomic sequences available (25-FEB-12). With the keyword "N*". 149; Alread...
genome.crg.es
GNV-1 HOME
http://genome.crg.es/webservices
Bioinformatics and Genomics Node. BioMoby services to support clustering of co-regulated genes based on similarity of promoter configurations". The project aims to provide bioinformatics resources through the web. In this regard, we have designed and implemented a set of Web services that are compliant with bioMoby. We have been focusing on providing genome analysis resources. These resources are of various types:. Signal predicition (transcription regulatory elements or splicing elements).
hackathon2.dbcls.jp
Participants – BioHackathon 2009
http://hackathon2.dbcls.jp/wiki/Participants
Marine Genomics Unit, OIST, Japan). TogoWS, BioRuby, Galaxy i18n,. Kazusa DNA Res, Japan). Keiko Sakuma (DBCLS, Japan). Eiji Ueda (DBCLS, Japan). Director of Marine Genomics Unit, OIST, Japan). Director of DBCLS, Japan). Yoshiki Hotta (Director of ROIS, Japan). Galaxy; Emory Univ, US). Galaxy; Penn State Univ, US). BioMart; OICR, Canada). BioMart/GMOD; EBI, UK). Univ of Granada, Spain). Univ of Granada, Spain). MOWserv, mAPI, jORCA, Magallanes; Universidad de Málaga, Spain). José M. Fernández. Inst Adv&#...
test.biocatalogue.org
Test BiodiversityCatalogue - Announcements - BioCatalogue Rails 3 Upgrade
https://test.biocatalogue.org/announcements/39
Sign in using OpenID, Facebook, Twitter, etc. Even if you don't yet have an account here. Sign up for an account. BioCatalogue Rails 3 Upgrade. BioCatalogue Rails 3 Upgrade. BioCatalogue has undergone a major upgrade to Rails 3 and Ruby 1.9, in addition to a number of bug fixes. Some of the new features include: a new and faster search engine, exporting services as a spreadsheet for curation and UI tweaks. And the European Bioinformatics Institute (EMBL-EBI). The project was funded by the BBSRC.
moby.generationcp.org
BioMoby/BioCASE Services
http://moby.generationcp.org/moby/bb_services/docs/index.html
Is an interoperability project connecting biological data and analytical services using SOAP-based Web services. The Biological Collection Access Service for Europe, BioCASE. Is a transnational network of biological collections of all kinds. This document describes an experimental project combining those two together. The expected audience for this document are developers that wish to create their own BioMoby services on top of existing BioCASE databases. Therefore, some chapters of this document are...
blipkit.open-bio.org
Blip: Architecture
http://blipkit.open-bio.org/architecture.html
Blip: Biomedical Logic Programming. Blip is a data integration toolkit. It wraps a variety of file formats and data resources (called bioresources. Providing a unified query layer. This figure shows how a general purpose application (in this case Amigo-NG, a serval. Web application) queries data from a variety of sources. TODO: imagemap this png. TODO: fix diagram - prolog xml transform now used in place of XSL for SBML data. At the bottom of the diagram are the bioresources. Db, etc. Each of these d...
blipkit.open-bio.org
Blip: Serval
http://blipkit.open-bio.org/serval.html
Blip: Biomedical Logic Programming. Prolog as a server application language. To find out more. Serval is a logical-functional framework for developing web applications. It is generic and largely independent of the bio-specific modules. However, both serval and the bio-specific modules depend upon the same utility module, so I have decided just to bundle serval with blip for now. If you are interested in a distribution that is independent on Blip, contact the developer. However, Prolog's native I/O comman...
