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GeneFriends: A guilt-by-association tool to find co-expressed genes and functions

Welcome to GeneFriends - -RNAseq- -. GeneFriends employs a RNAseq based gene co-expression network for candidate gene prioritization, based on a seed list of genes, and for functional annotation of unknown genes in human and mouse. For more details on how to use GeneFriends click here. Input a gene or list of gene/transcript IDs to obtain co-expressed genes/transcripts and their respective functional enrichment. Human ( Homo sapiens. Mouse ( Mus musculus. Enter one or more gene identifiers.

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GeneFriends: A guilt-by-association tool to find co-expressed genes and functions | genefriends.org Reviews
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Welcome to GeneFriends - -RNAseq- -. GeneFriends employs a RNAseq based gene co-expression network for candidate gene prioritization, based on a seed list of genes, and for functional annotation of unknown genes in human and mouse. For more details on how to use GeneFriends click here. Input a gene or list of gene/transcript IDs to obtain co-expressed genes/transcripts and their respective functional enrichment. Human ( Homo sapiens. Mouse ( Mus musculus. Enter one or more gene identifiers.
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1 genefriends rnaseq
2 references
3 microarray
4 changelog
5 gene query
6 arrayexpress gene id
7 ensembl gene id
8 entrez gene id
9 genomernai id
10 gene symbol
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genefriends rnaseq,references,microarray,changelog,gene query,arrayexpress gene id,ensembl gene id,entrez gene id,genomernai id,gene symbol,hgnc gene id,mim gene id,mirbase id,refseq gene id,refseq protein id,transfac id,ucsc gene id,unigene id,uniprot id
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GeneFriends: A guilt-by-association tool to find co-expressed genes and functions | genefriends.org Reviews

https://genefriends.org

Welcome to GeneFriends - -RNAseq- -. GeneFriends employs a RNAseq based gene co-expression network for candidate gene prioritization, based on a seed list of genes, and for functional annotation of unknown genes in human and mouse. For more details on how to use GeneFriends click here. Input a gene or list of gene/transcript IDs to obtain co-expressed genes/transcripts and their respective functional enrichment. Human ( Homo sapiens. Mouse ( Mus musculus. Enter one or more gene identifiers.

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About GeneFriends

http://www.genefriends.org/RNAseq/about

A 1 minute presentation on GeneFriends' motivation and purpose:. GeneFriends:RNAseq relies on a co-expression map that describes which genes tend to generally activate (increase in expression) and deactivate (decrease in expression) simultaneously in approximately 4000 Human RNAseq samples (obtained from the Short Read Archive (SRA) database of pubmed). This creates a general impression of which genes tend to activate simultaneously. Assign putative functions to poorly annotated genes. A full list of co-...

2

GeneFriends: A guilt-by-association tool to find co-expressed genes and functions

http://www.genefriends.org/microArray

Welcome to GeneFriends - -Microarray- -. GeneFriends:Microarray employs a microarray based gene co-expression network for candidate gene prioritization, based on a seed list of genes, and for functional annotation of unknown genes in humans and in model organisms. For more details on how to use GeneFriends click here. Input a gene or list of genes to obtain co-expressed genes and their respective functional enrichment. Mouse ( Mus musculus. Rat ( Rattus norvegicus. Fruit fly ( Drosophila. Identify and ra...

3

References

http://www.genefriends.org/RNAseq/references

To cite this work. Van Dam S, Craig T, de Magalhães JP. GeneFriends: a human RNA-seq-based gene and transcript co-expression database. Nucleic Acids Res. 2015 Jan 28;43(Database issue) [ PubMed. Other tools employed by GeneFriends. We use the DAVID web service to display functional annotations based on the selected genes. More information is provided on the DAVID website. Huang DW, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources.

4

GeneFriends: A guilt-by-association tool to find co-expressed genes and functions

http://www.genefriends.org/RNAseq

Welcome to GeneFriends - -RNAseq- -. GeneFriends employs a RNAseq based gene co-expression network for candidate gene prioritization, based on a seed list of genes, and for functional annotation of unknown genes in human and mouse. For more details on how to use GeneFriends click here. Input a gene or list of gene/transcript IDs to obtain co-expressed genes/transcripts and their respective functional enrichment. Human ( Homo sapiens. Mouse ( Mus musculus. Enter one or more gene identifiers.

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22q13 deletion syndrome: How do we know which genes are important? | arm22q13

https://arm22q13.wordpress.com/2015/10/04/22q13-deletion-syndrome-how-do-we-know-which-genes-are-important

22q13 deletion syndrome: making peace with the science and the syndrome. Splitting, Lumping and Clustering. Defining Phelan McDermid syndrome. Why don’t we have better drugs for 22q13 deletion syndrome? What do parents want to know? Is 22q13 deletion syndrome a mitochondrial disorder? Educating children with 22q13 deletion syndrome. How to fix SHANK3. Have you ever met a child like mine? How do I know which genes are missing? 22q13 deletion syndrome and science leadership. The hope of precision medicine.

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Cancer Biology, Ageing, Genomics and Bioinformatics

http://www.genomics.senescence.info/cancer

A curated database of candidate human ageing-related genes and genes associated with longevity and/or ageing in model organisms. A curated database of genes associated with dietary restriction in model organisms either from genetic manipulation experiments or gene expression profiling. Database of human genetic variants associated with longevity. Projects focused on gene expression profiling of ageing and of dietary manipulations of ageing, such as caloric restriction. Analyses using the AnAge database.

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GeneFriends: A guilt-by-association tool to find co-expressed genes and functions

Welcome to GeneFriends - -RNAseq- -. GeneFriends employs a RNAseq based gene co-expression network for candidate gene prioritization, based on a seed list of genes, and for functional annotation of unknown genes in human and mouse. For more details on how to use GeneFriends click here. Input a gene or list of gene/transcript IDs to obtain co-expressed genes/transcripts and their respective functional enrichment. Human ( Homo sapiens. Mouse ( Mus musculus. Enter one or more gene identifiers.

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