weissmanlab.ucsf.edu
Weissman lab links
http://weissmanlab.ucsf.edu/links/links.html
Byers Hall Room 403B. San Francisco, CA 94158-2330. Lab Administrator, Joan Kanter: 415-514-1681. Lab Manager, Manny de Vera: 415-514-4125. Software from the Weissman Lab. Software for analysis of pooled screens and genetic interaction maps in mammalian cells. Package for coding sequence annotation based on ribosome profiling data. Python library for analysis of high-throughput sequencing and other genomic data. Pipeline for analysis of pooled genetic screens. Protocols related to CRISPRi/a screens.
kampmannlab.ucsf.edu
Functional Genomics Platform | Kampmann Lab
http://kampmannlab.ucsf.edu/functional-genomics-platform
Skip to main content. University of California, San Francisco. Or an array of transcriptional activator domains ( CRISPRa. Gilbert LA, Horlbeck MA, Adamson B, Villalta JE, Chen Y, Whitehead EH, Guimaraes C, Panning B, Ploegh HL, Bassik MC, Qi LS, Kampmann M* ,. Weissman JS* (2014). Genome-scale CRISPR-mediated control of gene repression and activation. 159(3): 647-661. NIHMS630425. Systematic genetic interaction maps. Overview: Our functional genomics platform. Our original implementation was based on RN...
kampmannlab.ucsf.edu
Resources | Kampmann Lab
http://kampmannlab.ucsf.edu/resources
Skip to main content. University of California, San Francisco. A suite of bioinformatics tools for the analysis of pooled genetic screens and the construction of genetic interaction maps. Based on the quantitative framework we developed:. Kampmann M, Bassik MC and Weissman JS (2013) Integrated platform for genome-wide screening and construction of high-density genetic interaction maps in mammalian cells. Proceedings of the National Academy of Sciences. 110(25): E2317-26. PMC3690882. PMH20: library expres...