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HyPhy Wiki

HyPhy - Hypothesis testing using Phylogenies. HyPhy is an open-source software package for the analysis of genetic sequences. Using techniques in phylogenetics, molecular evolution, and machine learning. It features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses. Additionally, HyPhy features support for parallel computing environments (via message passing interface. HyPhy has over 8000 registered users. And has been cited in over 900. Versi...

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HyPhy Wiki | hyphy.org Reviews

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HyPhy - Hypothesis testing using Phylogenies. HyPhy is an open-source software package for the analysis of genetic sequences. Using techniques in phylogenetics, molecular evolution, and machine learning. It features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses. Additionally, HyPhy features support for parallel computing environments (via message passing interface. HyPhy has over 8000 registered users. And has been cited in over 900. Versi...

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HyPhy Wiki | hyphy.org Reviews

https://hyphy.org

HyPhy - Hypothesis testing using Phylogenies. HyPhy is an open-source software package for the analysis of genetic sequences. Using techniques in phylogenetics, molecular evolution, and machine learning. It features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses. Additionally, HyPhy features support for parallel computing environments (via message passing interface. HyPhy has over 8000 registered users. And has been cited in over 900. Versi...

INTERNAL PAGES

hyphy.org

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Recent changes - HyPhy Wiki

http://hyphy.org/w/index.php/Special:RecentChanges

Track the most recent changes to the wiki on this page. Changes in last 1. Show new changes starting from 22:40, 26 August 2016. Retrieved from " http:/ hyphy.org/w/index.php/Special:RecentChanges.

2

Pages that link to "Main Page" - HyPhy Wiki

http://hyphy.org/w/index.php/Special:WhatLinksHere/Main_Page

Pages that link to "Main Page". No pages link to Main Page. Retrieved from " http:/ hyphy.org/w/index.php/Special:WhatLinksHere/Main Page.

3

Troubleshooting - HyPhy Wiki

http://hyphy.org/w/index.php/Troubleshooting

Here, developers and users can post their recipes to getting things done or solutions to common problems. Please cross-reference to HyPhy Batch Language pages in the wiki as much as possible to make it easier to find these guides. This resource is provided with no guarantees; if something doesn't work out for you, please edit the entry or append a comment - that is how a wiki is done! The branch lengths in my tree are different from the ones in the file. This page has been accessed 11,384 times.

4

Special pages - HyPhy Wiki

http://hyphy.org/w/index.php/Special:SpecialPages

Pages with the fewest revisions. Pages without language links. All pages with prefix. Login / sign up. Recent changes and logs. Gallery of new files. Media reports and uploads. Search for duplicate files. Wiki data and tools. Pages with the most categories. Pages with the most revisions. Retrieved from " http:/ hyphy.org/w/index.php/Special:SpecialPages.

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Teaching - HyPhy Wiki

http://hyphy.org/w/index.php/Teaching

Retrieved from " http:/ hyphy.org/w/index.php? This page was last modified on 17 January 2013, at 03:16. This page has been accessed 6,831 times. Content is available under GNU Free Documentation License 1.3.

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bioinformaticss.blogspot.com

BIOINFORMATICS: September 2008

http://bioinformaticss.blogspot.com/2008_09_01_archive.html

Thursday, September 25, 2008. Move mouse over buttons to learn more. For Peaks - 4Peaks can read and write most common trace file formats, and allows direct access to both sequence and translation. It offers the ability to analyze, edit and correct your sequence data. 4Peaks leverages MacOSX strong foundation to bring you the best sequence trace viewer available. period. New Features in 4Peaks 1.7. Labels: To edit and visualize the DNA. Wednesday, September 24, 2008. Gene structure Prediction tool. EBI- ...

softlinks.amnh.org

Evolutionary Genetics Software Links by Sergios-Orestis Kolokotronis

http://softlinks.amnh.org/molevol.html

Performs a multitude of tests and analyses, including coalescent simulations. Populations can be mouse-defined. A program package implementing a variety of sophisticated models of nucleotide and protein sequence evolution via ML. Allows to test alternative hypotheses using likelihood ratio tests. Not recommended for tree-building. Handy for ML and hypothesis testing. Also tests for selection. Customizable through its batch language. Simulates the evolution of nucleotide and aminoacid sequences along a ph...

iep.bicpu.edu.in