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SiteSifter - Main UCLA

SiteSifter finds highly conserved DNA motifs embedded within coding regions. Each instance of a motif is scored based on the chance that its constituent codons are conserved over and above that required for amino acid conservation. Find all conserved instances of a motif. Choose a known motif or a custom DNA sequence:. Select a motif -. 2 Enter a custom motif:. With conservation in at least. Genomes (scoring only available for 17-genome conservation). Find all conserved motifs contained in a given gene.

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SiteSifter - Main UCLA | sitesifter.org Reviews
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SiteSifter finds highly conserved DNA motifs embedded within coding regions. Each instance of a motif is scored based on the chance that its constituent codons are conserved over and above that required for amino acid conservation. Find all conserved instances of a motif. Choose a known motif or a custom DNA sequence:. Select a motif -. 2 Enter a custom motif:. With conservation in at least. Genomes (scoring only available for 17-genome conservation). Find all conserved motifs contained in a given gene.
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KEYWORDS
1 1 known motifs
2 hsa mir 1
3 hsa mir 7
4 hsa mir 9
5 hsa let 7a
6 hsa mir 10a
7 hsa mir 15a
8 hsa mir 18a
9 hsa mir 19a
10 hsa mir 23a
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1 known motifs,hsa mir 1,hsa mir 7,hsa mir 9,hsa let 7a,hsa mir 10a,hsa mir 15a,hsa mir 18a,hsa mir 19a,hsa mir 23a,hsa mir 27a,hsa mir 29a,hsa mir 30a,hsa mir 33a,hsa mir 34a,hsa mir 34b,hsa let 7d,hsa mir 99b,references
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SiteSifter - Main UCLA | sitesifter.org Reviews

https://sitesifter.org

SiteSifter finds highly conserved DNA motifs embedded within coding regions. Each instance of a motif is scored based on the chance that its constituent codons are conserved over and above that required for amino acid conservation. Find all conserved instances of a motif. Choose a known motif or a custom DNA sequence:. Select a motif -. 2 Enter a custom motif:. With conservation in at least. Genomes (scoring only available for 17-genome conservation). Find all conserved motifs contained in a given gene.

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SiteSifter - Source

http://www.sitesifter.org/source.php

SiteSifter is a command-line application written in C#. It was developed on Windows, but may work in other operating systems with a .NET framework implementation. If you manage to get SiteSifter working with Mono (it may even work out of the box), please let me know! You can download the source for SiteSifter here. It is provided as a Visual Studio 2008 project, but the .cs files should work as is in other environments. And the gene annotation file located here. All files must be decompressed.

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SiteSifter - Main UCLA

http://www.sitesifter.org/index.php

SiteSifter finds highly conserved DNA motifs embedded within coding regions. Each instance of a motif is scored based on the chance that its constituent codons are conserved over and above that required for amino acid conservation. Find all conserved instances of a motif. Choose a known motif or a custom DNA sequence:. Select a motif -. 2 Enter a custom motif:. With conservation in at least. Genomes (scoring only available for 17-genome conservation). Find all conserved motifs contained in a given gene.

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SiteSifter - Main UCLA

SiteSifter finds highly conserved DNA motifs embedded within coding regions. Each instance of a motif is scored based on the chance that its constituent codons are conserved over and above that required for amino acid conservation. Find all conserved instances of a motif. Choose a known motif or a custom DNA sequence:. Select a motif -. 2 Enter a custom motif:. With conservation in at least. Genomes (scoring only available for 17-genome conservation). Find all conserved motifs contained in a given gene.

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