UNIPEP.ORG

peptideatlas.org

Peptide Atlas

http://www.peptideatlas.org/feedback.php

Farrah, et al.). Thank you for taking the time to send us feedback to help us improve this resource. Please provide the information below in as much detail as you can:. Email address (so we can respond to you about your feedback. No, we won't send you spam):. Verification Code (Please type in the word 'ISB'. This helps us deflect spammers who try to use this form):.

peptideatlas.org

Peptide Atlas

http://www.peptideatlas.org/repository/repository_public_Hs_Plasma2.php

RAW DATA AVAILABLE FOR DOWNLOAD. You can use the row above the orange row to filter and limit the data displayed within the table. Just type or select the search terms in the box above each column, and hit enter, the table will be filtered according to all filter terms you entered. Click "reset" on the up right corner of the table to clear all the texts in the first row. There are 91 experimental datasets available for download (Wed Apr 13 10:03:47 PDT 2011 ). 2007-08-08 SEC IEF LTQFT. HUPO PPP-I Lab 1 b...

peptideatlas.org

PeptideAtlas Builds Download

http://www.peptideatlas.org/builds/human/brain/index.php

Farrah, et al.). Below are individual Human PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A link named "PSM FDR" denotes the PSM FDR value used in the build. CURRENT BUILD: Human brain 201106. Peptide sequences in FASTA format:. PSM FDR = 0.0035. Biosequence Set in FASTA format:. PSM FDR = 0.0035. PSM FDR = 0.0035. Database tables exported as an XML file:. PSM FDR = 0.0035. PSM FDR = 0.0035. PSM FDR = 0.0035.

peptideatlas.org

PeptideAtlas - Funding

http://www.peptideatlas.org/funding.php

Farrah, et al.). Funding sources for PeptideAtlas. The PeptideAtlas project acknowledges the various funding sources that have made it possible to develop and maintain this community resource. National Human Genome Research Institute. National Institute of General Medical Sciences. This project has been funded in part with Federal funds from the National Heart, Lung, and Blood Institute, National Institutes of Health, under. Contract No. N01-HV-28179.

peptideatlas.org

Sc PeptideAtlas Builds Download

http://www.peptideatlas.org/builds/honeybee/index.php

Farrah, et al.). Below are individual Honeybee PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. CURRENT BUILD: Honeybee 201003. Peptide sequences in FASTA format:. PSM FDR = 0.0007. Biosequence Set in FASTA format:. PSM FDR = 0.0007. PSM FDR = 0.0007. Database tables exported as an XML file:. PSM FDR = 0.0007. Database tables exported as mysql dump file:. PSM FDR = 0.0007. Peptide CDS and chromosomal coordinates:.

peptideatlas.org

PASSEL

http://www.peptideatlas.org/passel

Farrah, et al.). The PeptideAtlas SRM Experiment Library (PASSEL) is a component of the PeptideAtlas project that is designed to enable submission, dissemination, and reuse of SRM experimental results from analysis of biological samples. Browse available SRM experiments. Submit an SRM dataset. Access pre-publication data with reviewer password. In Liverpool, UK. SRM is Nature method of the year 2012. PASSEL receives datasets from the Human Proteome Project special issue in JPR.

peptideatlas.org

Peptide Atlas

http://www.peptideatlas.org/overview.php

Farrah, et al.). The long term goal of the PeptideAtlas project is full annotation of eukaryotic genomes through a thorough validation of expressed proteins. The PeptideAtlas provides a method and a framework to accommodate proteome information coming from high-throughput proteomics technologies. The online database. Administers experimental data in the public domain. We encourage you to contribute to the database. Details of the PeptideAtlas construction can be found within the first publication. The pe...

dbptm.mbc.nctu.edu.tw

dbPTM

http://dbptm.mbc.nctu.edu.tw/index.php

DbPTM 10th Year Anniversary. An Integrated Resource for Protein Post-Translational Modifications. Drug binding-associated PTM sites. The Statistics of PTMs. Move to the Statistics Page. Modified residue Glycosylation Lipidation Crosslink. Structural characterization of PTM substrate sites. The Benchmark dataset of PTMs. ex: O-Glycosylation. Reconstruct the PTM Regulatory Network. ex: O-Glycosylation. Welcome to dbPTM 10th Year Anniversary. Integrative Platform for PTM Analysis. Large-scale identification...

peptideatlas.org

Peptide Atlas

http://www.peptideatlas.org/builds

Farrah, et al.). PeptideAtlas Builds – Bulk Downloads. PeptideAtlas builds are performed for individual organisms and important sample groups (e.g., plasma/serum). The data products of these individual builds may accessed interactively in the database via the Stats and Lists. Page or with custom queries. Or they may be downloaded in their entirety below. FDR of 1%. For these builds, a peptide usually must have a probability much greater than 0.9 to be included. Number of Peptide-Spectrum Matches (PSMs).

peptideatlas.org

ISB Data Server

http://www.peptideatlas.org/upload

Farrah, et al.). Thank you for your interest in contributing to the PeptideAtlas database. Please submit your MS/MS, SRM, or SWATH-MS dataset with all of the mass spectrometer output files, either in their native format (e.g., .raw, .wiff, .d, etc.) or in mzML format. SRM data must be accompanied by a transition list in mProphet format, as illustrated in this template. The spectra will then be processed by the PeptideAtlas curators to ensure consistency throughout PeptideAtlas.