2013.bionlp-st.org

BioNLP-ST 2013

BMC Bioinformatics special issue. The BioNLP Shared Task (BioNLP-ST) series represents a community-wide trend in text-mining for biology toward fine-grained information extraction (IE). The two previous events, BioNLP-ST 2009 and 2011, attracted wide attention, with over 30 teams submitting final results. The tasks and their data have since served as the basis of numerous studies, released event extraction systems, and published datasets. Participation to the task. Remains open on each individual task pa...

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BioNLP-ST 2013 | 2013.bionlp-st.org Reviews

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BMC Bioinformatics special issue. The BioNLP Shared Task (BioNLP-ST) series represents a community-wide trend in text-mining for biology toward fine-grained information extraction (IE). The two previous events, BioNLP-ST 2009 and 2011, attracted wide attention, with over 30 teams submitting final results. The tasks and their data have since served as the basis of numerous studies, released event extraction systems, and published datasets. Participation to the task. Remains open on each individual task pa...

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2 shared tasks

3 introduction

4 tasks

5 file formats

6 supporting resources

7 participation

8 bionlp st workshop

9 committees

10 supporting institutions

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search this site,shared tasks,introduction,tasks,file formats,supporting resources,participation,bionlp st workshop,committees,supporting institutions,journal publication,on acl archive,for more information,cancer genetics,pathway curation,report abuse

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BioNLP-ST 2013 | 2013.bionlp-st.org Reviews

https://2013.bionlp-st.org

BMC Bioinformatics special issue. The BioNLP Shared Task (BioNLP-ST) series represents a community-wide trend in text-mining for biology toward fine-grained information extraction (IE). The two previous events, BioNLP-ST 2009 and 2011, attracted wide attention, with over 30 teams submitting final results. The tasks and their data have since served as the basis of numerous studies, released event extraction systems, and published datasets. Participation to the task. Remains open on each individual task pa...

INTERNAL PAGES

2013.bionlp-st.org

1

Report Abuse

http://2013.bionlp-st.org/system/app/pages/reportAbuse

By submitting this form, you are alerting the Google Sites team that this site has content that is in violation of our Terms of Use. Why are you reporting the content on this Site as inappropriate? This Site contains spam. This Site contains phishing. This Site contains malware. This Site contains sexually explicit material (like pornography or nudity). This Site contains content that is harassing me or someone else. This Site promotes violence or has hate speech.

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File Formats - BioNLP-ST 2013

http://2013.bionlp-st.org/file-formats

BMC Bioinformatics special issue. The BioNLP Shared Task (ST) 2013 data uses standoff. Formats similar to those of the BioNLP Shared Task 2009. And BioNLP Shared Task 2011 file formats. The BioNLP Shared Task 2013 file formats are identified by file name suffixes (".txt", "a1", etc.) and described in detail in the following. T1 Protein 0 7 RFLAT-1. T2 Positive regulation 53 62 activates. E1 Positive regulation:T2 Theme:E2 Cause:T1. R1 Subunit-Complex Arg1:T1 Arg2:T3. T1 Protein 0 7 RFLAT-1. The format fo...

3

Gene Regulation Network (GRN) - BioNLP-ST 2013

http://2013.bionlp-st.org/tasks/gene-regulation-network

BMC Bioinformatics special issue. Gene Regulation Network (GRN). The BioNLP-ST 2013 is completed. Thanks to all participating teams. The final results are given in the table below. Detailed results are available in the GRN Test Results. Assess the performance of information extraction systems to extract a genic regulation network. The goal is to retrieve all the genic interactions of the reference network at least one occurrence per interaction independently of where they are mentioned in the literature.

4

BioNLP-ST Workshop - BioNLP-ST 2013

http://2013.bionlp-st.org/bionlp-st-workshop

BMC Bioinformatics special issue. Date of the workshop: 9 August 2013. Location: Sofia, Bulgaria. Hosted by the ACL BioNLP workshop. Workshop, 8-9 August 2013 in the ACL 2013 Conference. Page for the deadlines. Below, with links to the papers on the ACL Anthology. The submission Web site is open at https:/ www.softconf.com/acl2013/BioNLP-sharedtask2013/. Used in the challenge. Deadline for pre-submission: April 26. Please submit title, authors, and description of participant team, methods, and resources.

5

Pathway Curation (PC) task - BioNLP-ST 2013

http://2013.bionlp-st.org/tasks/pathway-curation

BMC Bioinformatics special issue. Pathway Curation (PC) task. The primary PC task is completed. The task received final submissions from two teams. Thank you for your participation! Please note that the CG task continues as a challenge open to any interested party:. The Pathway Curation (PC) task is a main task of the BioNLP Shared Task 2013. PC task evaluation results. Results for full task, primary evaluation criteria. Gold (match) answer (match) recall prec. fscore. Chemical Entities of Biological Int...

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bionlp-st.org

About - BioNLP-ST (Shared Tasks)

http://www.bionlp-st.org/about

2016.bionlp-st.org

Supporting Resources - BioNLP-ST 2016

http://2016.bionlp-st.org/tasks/bb2/bb3_supporting-resources

BioASQ / BioNLP-ST Workshop Program. The goal of the supporting resources for the BioNLP Shared Task 2016 is to provide the task participants with annotations from state-of-the-art automated tools in order to minimize the time-investment necessary to participate in the shared task and to allow for participants to experiment on how to leverage automated analyses provided by existing Natural Language Processing systems. Regarding the resources, please contact: maiage-bibliome at jouy.inra.fr. Klein, D....

2016.bionlp-st.org

Tasks - BioNLP-ST 2016

http://2016.bionlp-st.org/tasks

BioASQ / BioNLP-ST Workshop Program.

sampo.pyysalo.net

Sampo Pyysalo

http://sampo.pyysalo.net/home

My name is Sampo Pyysalo, and I am a research associate at the Language Technology Lab (LTL). At the University of Cambridge. My research is on natural language processing with a focus on biomedical text mining, in particular machine learning for information extraction. I'm recently working mostly on event extraction from biomedical scientific publications, both organizing the BioNLP Shared Task. UD) effort, including the UD Finnish dependency treebank. Suppl 10), S2. [. 6), 868-875. [. 4), e55814. [.

bionlp-st.org

Recent site activity - BioNLP-ST (Shared Tasks)

http://www.bionlp-st.org/system/app/pages/recentChanges

Oct 21, 2012, 10:50 PM. Jin-Dong Kim edited Home. Oct 21, 2012, 10:07 PM. Jin-Dong Kim edited Home. Oct 21, 2012, 10:06 PM. Jin-Dong Kim edited Home. Jun 26, 2012, 7:37 PM. Jin-Dong Kim edited Home. Jun 10, 2012, 4:56 AM. Jin-Dong Kim edited Home. Sep 22, 2011, 1:25 AM. Jin-Dong Kim edited Systems. Sep 22, 2011, 1:23 AM. Jin-Dong Kim edited Systems. Sep 22, 2011, 1:23 AM. Jin-Dong Kim edited Systems. Sep 21, 2011, 11:56 PM. Jin-Dong Kim edited Systems. Sep 21, 2011, 11:56 PM. Jin-Dong Kim edited Systems.

nactem.ac.uk

Text Mining Resources

http://nactem.ac.uk/resources.php

You are in: Home. BioNLP Shared Task 2013. BioNLP Shared Task 2011. How to find us. This page provides links to varous types of resources, developed both by NaCTeM and externally, which may be used in the development and/or evaluation of text mining systems. An enrichment of the English ACE 2005 corpus, relating to news, in which information pertaining to various aspects of event interpretation has been added. A collection of 240 MEDLINE abstracts, annotated with events pertaining to gene regulation.

bionlp-st.org

Systems - BioNLP-ST (Shared Tasks)

http://www.bionlp-st.org/systems

bionlp-st.org

BioNLP-ST (Shared Tasks)

http://www.bionlp-st.org/home

BMC Bioinformatics special issue. BioNLP-ST 2013 under preparation. BioNLP-ST mailing list launched. BioNLP-ST homepage (under development). To subscribe to the list, send an e-mail to. Majordomo (at) bionlp-st (dot) org. In the body of the message. To unsubscribe from it,. Send an e-mail to. Majordomo (at) bionlp-st (dot) org. In the body of the message.

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2013.bionlp-st.org

BioNLP-ST 2013

BMC Bioinformatics special issue. The BioNLP Shared Task (BioNLP-ST) series represents a community-wide trend in text-mining for biology toward fine-grained information extraction (IE). The two previous events, BioNLP-ST 2009 and 2011, attracted wide attention, with over 30 teams submitting final results. The tasks and their data have since served as the basis of numerous studies, released event extraction systems, and published datasets. Participation to the task. Remains open on each individual task pa...

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