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4SALE - A tool for Synchronous RNA Sequence and Secondary Structure Alignment and Editing. Philipp N. Seibel. University of Würzburg. 4SALE 1.7 is out now. 4SALE 1.5 is out now. This release includes a secondary structure viewer. Which provides a complete new way of visual monitoring different structural aspects, while editing the alignment. The edit operations were also improved to allow basic sequence modifications. 4SALE now integrates lara. To phylogeny programs as for example the CBCAnalyzer.

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Home | 4sale.bioapps.biozentrum.uni-wuerzburg.de Reviews

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4SALE - A tool for Synchronous RNA Sequence and Secondary Structure Alignment and Editing. Philipp N. Seibel. University of Würzburg. 4SALE 1.7 is out now. 4SALE 1.5 is out now. This release includes a secondary structure viewer. Which provides a complete new way of visual monitoring different structural aspects, while editing the alignment. The edit operations were also improved to allow basic sequence modifications. 4SALE now integrates lara. To phylogeny programs as for example the CBCAnalyzer.

<META> KEYWORDS

1 jörg schultz

2 tobias müller

3 thomas dandekar

4 matthias wolf

5 department of bioinformatics

6 biocenter

7 germany

8 quickstart

9 videos

10 download

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jörg schultz,tobias müller,thomas dandekar,matthias wolf,department of bioinformatics,biocenter,germany,quickstart,videos,download,foursale 4sale cmd,ml structure trees,lara integration,abstract,background,results,conclusions

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Home | 4sale.bioapps.biozentrum.uni-wuerzburg.de Reviews

https://4sale.bioapps.biozentrum.uni-wuerzburg.de

4SALE - A tool for Synchronous RNA Sequence and Secondary Structure Alignment and Editing. Philipp N. Seibel. University of Würzburg. 4SALE 1.7 is out now. 4SALE 1.5 is out now. This release includes a secondary structure viewer. Which provides a complete new way of visual monitoring different structural aspects, while editing the alignment. The edit operations were also improved to allow basic sequence modifications. 4SALE now integrates lara. To phylogeny programs as for example the CBCAnalyzer.

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4sale.bioapps.biozentrum.uni-wuerzburg.de

1

Quickstart

http://4sale.bioapps.biozentrum.uni-wuerzburg.de/quickstart.html

4SALE - A tool for Synchronous RNA Sequence and Secondary Structure Alignment and Editing. Philipp N. Seibel. University of Würzburg. 1 Retrieve sequence and structure information. Search for ITS2 sequence and secondary structure data at the ITS2 Database. Type the name of a taxon, e.g. "Volvocaceae", in the search field and hit the search button. 295901433 Gonium maiaprilis GGGTTAATACTCGCTCTTTCCTTCCTTGATTGTGAAGGCAAAGAACGGAAC .( (.( ( ( ( .( .(.) ) ) .) ) ).) ). 4 Edit and select alignment. To edit and/o...

2

Download

http://4sale.bioapps.biozentrum.uni-wuerzburg.de/download.html

4SALE - A tool for Synchronous RNA Sequence and Secondary Structure Alignment and Editing. Philipp N. Seibel. University of Würzburg. Changes in this release. Added import of xfasta file extensions when opening a file containing secondary structure. Removed all remote features from GUI. Please use ClustalW2 1.83. With 4SALE 1.7. Download 4SALE (1.7). Changes in 1.6. Correction in CBC counts (Bugfix). Improved visibility of align button. Changes in 1.5. New structure viewer. (New Feature). RNAforester Web...

3

Videos - Structure Viewer

http://4sale.bioapps.biozentrum.uni-wuerzburg.de/tutorial_4.html

4SALE - A tool for Synchronous RNA Sequence and Secondary Structure Alignment and Editing. Philipp N. Seibel. University of Würzburg. Sequences and Secondary Structures.

4

Help - Alignment Window and Toolbar

http://4sale.bioapps.biozentrum.uni-wuerzburg.de/help_1.html

4SALE - A tool for Synchronous RNA Sequence and Secondary Structure Alignment and Editing. Philipp N. Seibel. University of Würzburg. Alignment Window and Toolbar. Conservation Bars and Sequence Logos. Left-clicking on the small view above the alignment enables/disables the conservation visualization. By default it is disabled for performance reasons. A right click toggles between the visualization modes, which are conservation bars and sequence logos. Button to clear the selection. All insertions and de...

5

Help - Structure Inspector

http://4sale.bioapps.biozentrum.uni-wuerzburg.de/4sale_cmd_1.html

4SALE - A tool for Synchronous RNA Sequence and Secondary Structure Alignment and Editing. Philipp N. Seibel. University of Würzburg. Foursale 1.2 (4SALE command line version) is out now. Foursale 1.2 is out now. This release is intended to be used per command line on operating systems supporting java = 1.5. It is designed for large-scale analyses and comes without GUI. If you use this program, please cite:.

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4SALE - A tool for Synchronous RNA Sequence and Secondary Structure Alignment and Editing. Philipp N. Seibel. University of Würzburg. 4SALE 1.7 is out now. 4SALE 1.5 is out now. This release includes a secondary structure viewer. Which provides a complete new way of visual monitoring different structural aspects, while editing the alignment. The edit operations were also improved to allow basic sequence modifications. 4SALE now integrates lara. To phylogeny programs as for example the CBCAnalyzer.

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