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Advanced Computational Biostructural Research Collaboratory

Welcome to the Advanced Computational Biostructural Research Collaboratory. Is a resource aimed to interact with the Scientific Community in order to share results and tools. The importance of Structural Genomics Research. Comes from Greek word protos. Meaning of primary importance. Although an increasing number of structural data collected by several laboratories is freely available, it is still not possible to design a mathematical model for predicting the three dimensional structure of proteins becaus...

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Advanced Computational Biostructural Research Collaboratory | acbrc.org Reviews
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Welcome to the Advanced Computational Biostructural Research Collaboratory. Is a resource aimed to interact with the Scientific Community in order to share results and tools. The importance of Structural Genomics Research. Comes from Greek word protos. Meaning of primary importance. Although an increasing number of structural data collected by several laboratories is freely available, it is still not possible to design a mathematical model for predicting the three dimensional structure of proteins becaus...
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Advanced Computational Biostructural Research Collaboratory | acbrc.org Reviews

https://acbrc.org

Welcome to the Advanced Computational Biostructural Research Collaboratory. Is a resource aimed to interact with the Scientific Community in order to share results and tools. The importance of Structural Genomics Research. Comes from Greek word protos. Meaning of primary importance. Although an increasing number of structural data collected by several laboratories is freely available, it is still not possible to design a mathematical model for predicting the three dimensional structure of proteins becaus...

INTERNAL PAGES

acbrc.org acbrc.org
1

Advanced Computational Biostructural Research Collaboratory

http://www.acbrc.org/pbbd.html

1 PBBD Protein Building Blocks Database. Motifs of super-secondary structure that are consistent with closed loop properties were collected manually using the following principles: 1) amino acid sequence length between 10 and 40 mers; 2) Cα-Cα distance between sequence extremities.

2

Advanced Computational Biostructural Research Collaboratory

http://www.acbrc.org/hcam.html

1 HCAM - Hidropathy Clustering Assisted Method. Igor N.Berezovsky, Valery M.Kirzhner, Alla Kirzhner, Vladimir R.Rosenfeld and Edward N.Trifonov. Closed loops: persistence of the protein chain returns. Protein Engineering vol.15 no.12 pp.955 957, 2002. Example of multiple alignment analysis by Gonnet substitution matrix of β barrels collected in our database. Each group of residues columns corresponds with good approximation to a separate type of secondary structure. 12 Hydropathy profile analysis. Left s...

3

Advanced Computational Biostructural Research Collaboratory

http://www.acbrc.org/aboutus.html

Name: Gullotto, Dr. Danilo. Clinical Microbiology Lab (infectious diseases). At present Danilo is involved in Structural Genomics/Proteomics research field. He was the author of mathematical methods which are narrowed towards secondary and tertiary structure prediction and remote homologues detection of both globular and transmembrane proteins from scratch. Moreover, he has been studying new evolutionary pathways to unscramble proteomic and genomic code since September 2007. Finally, he is in...

4

Advanced Computational Biostructural Research Collaboratory

http://www.acbrc.org/tools.html

The version of HCAM and BBSP 1.0.2 for MySQL Connector 6.0.5. Comparative results and PDB structures generated by BBSP and other protein remote homology detection methods. The whole suite enclosing the Protein Building Block Database (PBBD), together with PBB-Clust and PBB-Graph algorithms.

5

Advanced Computational Biostructural Research Collaboratory

http://www.acbrc.org/supram.html

1 Supramolecular studies of Rigidoporus. And other fungal laccases. Laccases (benzenediol oxygen oxidoreductase, EC 1.10.3.2) are multicopper oxidases containing transition metal ions which are essential for electron transfer from substrate to T1 copper site. The redox potential E. Is one of the most important parameter that characterizes the behaviour of these enzymes. Despite having very similar metal site features, the T1 copper site span a large range of E. Of their T1-Cu sites. Therefore, the E.

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Advanced Computational Biostructural Research Collaboratory

Welcome to the Advanced Computational Biostructural Research Collaboratory. Is a resource aimed to interact with the Scientific Community in order to share results and tools. The importance of Structural Genomics Research. Comes from Greek word protos. Meaning of primary importance. Although an increasing number of structural data collected by several laboratories is freely available, it is still not possible to design a mathematical model for predicting the three dimensional structure of proteins becaus...

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