acedb.org acedb.org

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AceDB

AceDB is a database designed specifically for handling genome and bioinformatic data. The tools it provides give great flexibility for the manipulation, display and annotation of genomic data. Acedb's very flexible schema notation allows easy modification and extension of data relationships by simple editing of the models file making it an ideal research tool.

http://www.acedb.org/

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AceDB | acedb.org Reviews
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AceDB is a database designed specifically for handling genome and bioinformatic data. The tools it provides give great flexibility for the manipulation, display and annotation of genomic data. Acedb's very flexible schema notation allows easy modification and extension of data relationships by simple editing of the models file making it an ideal research tool.
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1 quick guide
2 newsgroup
3 documents
4 downloads
5 extensions and interfaces
6 site map
7 cookie policy
8 webmaster@acedb org
9 coupons
10 reviews
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AceDB | acedb.org Reviews

https://acedb.org

AceDB is a database designed specifically for handling genome and bioinformatic data. The tools it provides give great flexibility for the manipulation, display and annotation of genomic data. Acedb's very flexible schema notation allows easy modification and extension of data relationships by simple editing of the models file making it an ideal research tool.

INTERNAL PAGES

acedb.org acedb.org
1

AceDB

http://www.acedb.org/Documentation

Acedb documentation is divided into 3 broad categories:. Including general introduction, how-to and other documents. How manage, perform recoveries and other larger scale database tasks. Interfaces, code documentation and so on.

2

AceDB

http://www.acedb.org/index.shtml

AceDB is a database designed specifically for handling genome and bioinformatic data. The tools it provides give great flexibility for the manipulation, display and annotation of genomic data. Acedb's very flexible schema notation allows easy modification and extension of data relationships by simple editing of the models file making it an ideal research tool.

3

AceDB

http://www.acedb.org/Software/Downloads

Please read this advice about a bug in acedb file parsing. AceDB may be downloaded free of charge - see AceDB Licensing. AceDB and GTK libraries. Please read this before downloading acedb. NB All tar files are currently tar bombs, in that the contents are simply left in your current directory. We plan to change this so detarring the file will create a dedicated directory and then put everything in that, but we haven't done so yet. There are three levels of code you can download:. Download this if you wan...

4

AceDB

http://www.acedb.org/introduction.shtml

AceDB is a genome database system developed since 1989 primarily by Jean Thierry-Mieg. CNRS, Montpellier) and Richard Durbin. Sanger Institute). It provides a custom database kernel, with a non-standard data model designed specifically for handling scientific data flexibly, and a graphical user interface with many specific displays and tools for genomic data. AceDB is used both for managing data within genome projects, and for making genomic data available to the wider scientific community. Versions of a...

5

AceDB

http://www.acedb.org/Software/Interfaces

AceDB Extensions and Interfaces. Interface between AceDB and Java. Biojava interface to AceDB. An object-oriented Perl interface for AceDB. A WWW interface to AceDB, based on AcePerl. The beginnings of a C API to AceDB. A Windows 9x/NT version of AceDB. A CORBA interface to the AceDB database. Sequence assembly system. (Temporarily unavailable). An automated test harness for Acedb. A user guide to AceDB Tools.

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TOTAL PAGES IN THIS WEBSITE

7

LINKS TO THIS WEBSITE

ws120.wormbase.org ws120.wormbase.org

About Wormbase

http://ws120.wormbase.org/about/downloads_linking_mining.html

Gene Name, 3-letter. Gene Name, Cosmid. Protein, C. elegans. Protein Family or Motif. Sequence, C. elegans Genomic. Strain, C. elegans. WS120 Referential Release, 07 Mar 2004 mirror site. Master is at www.wormbase.org. Downloads, Linking and Data Mining. Last modified: Sat Feb 28 12:11:03 CST 2004. Send comments or questions to WormBase.

wtsi-status.blogspot.com wtsi-status.blogspot.com

Wellcome Trust Sanger Institute service status: Sites hosted at the Sanger Institute

https://wtsi-status.blogspot.com/p/sites-hosted-at-sanger-institute.html

Wellcome Trust Sanger Institute service status. This blog is an additional mechanism whereby the Sanger Institute can inform users of any scheduled or unscheduled disruption to its IT services (web, web services and ftp) and time frames for their resolution. Sites hosted at the Sanger Institute. Sanger Sites ( *.sanger.ac.uk ). Http:/ annotrack.sanger.ac.uk/. Http:/ cvsweb.sanger.ac.uk/. Http:/ das.sanger.ac.uk/. Http:/ decipher.sanger.ac.uk/. Http:/ explorercat.sanger.ac.uk/. Http:/ www.ensembl....Http:...

ws130.wormbase.org ws130.wormbase.org

About Wormbase

http://ws130.wormbase.org/about/downloads_linking_mining.html

Gene Name, 3-letter. Gene Name, Cosmid. Genbank Acc. Num. Protein, C. elegans. Sequence, C. elegans. Strain, C. elegans. WS130 Referential Release, 16 Aug 2004 mirror site. Master is at www.wormbase.org. Downloads, Linking and Data Mining. Send comments or questions to WormBase.

ws130.wormbase.org ws130.wormbase.org

Linking to WormBase

http://ws130.wormbase.org/about/linking.html

Gene Name, 3-letter. Gene Name, Cosmid. Genbank Acc. Num. Protein, C. elegans. Sequence, C. elegans. Strain, C. elegans. WS130 Referential Release, 16 Aug 2004 mirror site. Master is at www.wormbase.org. Mining WormBase with AcePerl]. Mining WormBase with MySQL and PostgreSQL]. Linking the Cosmid Physical Map]. Public Access AcePerl Databases]. Linking to ACeDB Dumps]. Common WormBase Object Classes]. Linking and Mining WormBase. All objects in WormBase have a name. Lists some of the common classes.

ws150.wormbase.org ws150.wormbase.org

Linking to WormBase

http://ws150.wormbase.org/about/linking.html

Genbank Acc. Num. Protein, C. elegans. Sequence, C. elegans. Strain, C. elegans. WS150 Referential Release, 30 Nov 2005 . Master is at www.wormbase.org. Mining WormBase with AcePerl]. Mining WormBase with MySQL and PostgreSQL]. Linking the Cosmid Physical Map]. Public Access AcePerl Databases]. Linking to ACeDB Dumps]. Common WormBase Object Classes]. Linking and Mining WormBase. All objects in WormBase have a name. For example, the cell ADAR has a name of "ADAR" and a class of "Cell". If you are not sur...

ws150.wormbase.org ws150.wormbase.org

About Wormbase

http://ws150.wormbase.org/about/downloads_linking_mining.html

Genbank Acc. Num. Protein, C. elegans. Sequence, C. elegans. Strain, C. elegans. WS150 Referential Release, 30 Nov 2005 . Master is at www.wormbase.org. Downloads, Linking and Data Mining. Current C. elegans. Genome annotations (GFF format). Send comments or questions to WormBase.

bioinfo-user.org.uk bioinfo-user.org.uk

Bioinformatics [bioinfo-user.org.uk]

http://bioinfo-user.org.uk/dokuwiki/doku.php/bioinformatics

A collection of AceDB format databases. Tools to reformat sequence data into fasta format:. Web Service interfaces to provide access for legacy applications to current services:. EMBL-EBI RPC/encoded SOAP interfaces. Last modified: 2014/03/16 13:30 by.

blends.debian.org blends.debian.org

Debian Med Thermometer

https://blends.debian.org/med/thermometer

Help us to see Debian used by medical practitioners and biomedical researchers! Join us on the Alioth page. A Debian Pure Blend. Is a Debian internal project which assembles a set of packages that might help users to solve certain tasks of their work. The list on the right shows the tasks of debian-med. Tasks of Debian Med. Bugs of Debian Med. Debian stable behind unstable. Ubuntu behind Debian unstable. Debian Med Package Thermometer. 133 dfsg-1 bpo8 1. 20160605 dfsg-1 bpo8 1. 1600 dfsg-4 bpo8 1. 0 2015...

computational-genomics.net computational-genomics.net

Computational Genomics

http://www.computational-genomics.net/resources/software.html

Software Tools for Sequence Analysis:. A tool for viewing and managing genomic data. Artemis: genome viewer and annotation tool, and ACT: (Artemis Comparison Tool) a DNA sequence comparison viewer based on Artemis. Basic Local Alignment Search Tool for sequence similarity searching against nucleotide and protein databases. Wwwncbi.nlm.nih.gov/BLAST. Compare two sequences using BLAST (both sequences either protein or nucleotide). A suite of around 100 bioinformatics tools. A BLAST output filtering tool.

oxfordjournals.org oxfordjournals.org

Oxford Journals | Life Sciences | Nucleic Acids Research | Database Summary Paper Alpha List

http://www.oxfordjournals.org/nar/database/a

Database Summary Paper Alpha List. NAR Database Summary Paper Alphabetic List. 1000 Genomes Selection Browser. Engelken, Johannes; Pybus, Marc; Dall'Olio, Giovanni; Luisi, Pierre; Uzkudun, Manu; Carreño-Torres, Angel; Pavlidis, Pavlos; Laayouni, Hafid; Bertranpetit, Jaume. Signature of selection in the human genomes. 16S and 23S Ribosomal RNA Mutation Database. 16S and 23S ribosomal RNA mutations. Proteome database system for microbial research. 3D rRNA modification maps. 3DID - 3D interacting domains.

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acedb.org acedb.org

AceDB

AceDB is a database designed specifically for handling genome and bioinformatic data. The tools it provides give great flexibility for the manipulation, display and annotation of genomic data. Acedb's very flexible schema notation allows easy modification and extension of data relationships by simple editing of the models file making it an ideal research tool.

acedblog.com acedblog.com

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acedbn.com acedbn.com

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