agd.unibas.ch

AGD, the Ashbya Genome Database

What's New in AGD 3. Release 3.0 is described in an article by Gattiker et al. (2007). Upgrade to Ensembl 40. Improved interface and data. Gene Ontology annotation from SGD. Gene report pages now contain GO terms associated with the corresponding orthologues from S.cerevisiae. Comparative DNA and protein-level data is available, including synteny information in fungi. AGD now displays microarray expression data from A.gossypii. AGD, the Ashbya Genome Database. For information about A. gossypii.

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AGD, the Ashbya Genome Database | agd.unibas.ch Reviews

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What's New in AGD 3. Release 3.0 is described in an article by Gattiker et al. (2007). Upgrade to Ensembl 40. Improved interface and data. Gene Ontology annotation from SGD. Gene report pages now contain GO terms associated with the corresponding orthologues from S.cerevisiae. Comparative DNA and protein-level data is available, including synteny information in fungi. AGD now displays microarray expression data from A.gossypii. AGD, the Ashbya Genome Database. For information about A. gossypii.

<META> KEYWORDS

1 ashbya genome database

2 ashbya gossypii

3 neurospora crassa

4 saccharomyces cerevisiae

5 schizosaccharomyces pombe

6 anything

7 domain

8 family

9 gene

10 genomicalignment

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ashbya genome database,ashbya gossypii,neurospora crassa,saccharomyces cerevisiae,schizosaccharomyces pombe,anything,domain,family,gene,genomicalignment,sequence,as a wildcard,bmc genomics paper,agossypii,comparative genomics,expression data,a gossypii

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AGD, the Ashbya Genome Database | agd.unibas.ch Reviews

https://agd.unibas.ch

What's New in AGD 3. Release 3.0 is described in an article by Gattiker et al. (2007). Upgrade to Ensembl 40. Improved interface and data. Gene Ontology annotation from SGD. Gene report pages now contain GO terms associated with the corresponding orthologues from S.cerevisiae. Comparative DNA and protein-level data is available, including synteny information in fungi. AGD now displays microarray expression data from A.gossypii. AGD, the Ashbya Genome Database. For information about A. gossypii.

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agd.unibas.ch

1

ExportView

http://agd.unibas.ch/default/exportview

AGD version 3 based on Ensembl release 40 - Aug 2006. Export a different species. Select region/feature to Export. Choose one or two features from the same chromosome as anchor points and display the region between them. Both features must be mapped to the current Ensembl golden tiling path. If you select "None" for the second feature, the display will be based around the first feature. Please note that there is an upper limit of 5Mb that we will export. Bp upstream (to the left). FASTA format text file.

2

S.cerevisiae (Saccharomyces cerevisiae)

http://agd.unibas.ch/Saccharomyces_cerevisiae

Explore the Saccharomyces cerevisiae. Click on a chromosome for a closer view. Jump directly to sequence position. About the S. cerevisiae. The data on this site is a direct import of the Saccharomyces Genome Database dataset for the Saccharomyces cerevisiae. S288C genome. No additional genebuild was carried out, but a series of blast runs was done to provide ESTs, Swall hits, and other similarity data. We have included S.cerevisiae. The canonical data for S.cerevisiae. Is managed at SGD. SGD 1, Nov 2005.

3

Downloads

http://agd.unibas.ch/info/data/download.html

The Ashbya gossypii genomic data is managed within the GenBank/EMBL/DDBJ International Nucleotide Sequence Database. It can be downloaded from the NCBI GenBank. Creating links to AGD. Cross-references to AGD genes should have the format:. Http:/ agd.vital-it.ch/SPECIES/geneview? Where SPECIES is the species full name with spaces replaced with underscores, and GENENAME is any identifier for the gene. Example:. Http:/ agd.vital-it.ch/Ashbya gossypii/geneview? 2017 University of Basel.

4

N.crassa (Neurospora crassa)

http://agd.unibas.ch/Neurospora_crassa

Explore the Neurospora crassa. The genome has not been completely assembled and consists of 821 contigs. Jump directly to sequence position. About the N. crassa. The data on this site is a direct import of the GenBank genome data for the Neurospora crassa. We have included N.crassa. Into the AGD system to allow people to access the data through the user interface and to provide cross-species integration through our comparative genomics resources (such as homologous gene links and synteny viewer).

5

A.gossypii (Ashbya gossypii)

http://agd.unibas.ch/Ashbya_gossypii

Explore the Ashbya gossypii. Click on a chromosome for a closer view. Jump directly to sequence position. About the A. gossypii. The hemiascomycete Ashbya gossypii. Genome is described in Dietrich et al. (2004). If you use AGD, please cite Hermida et al. (2005). For information about A. gossypii. Please contact Peter Philippsen. AGD is developed by Alexandre Gattiker. Number of protein-coding Genes:. Number of pseudogene Genes:. Number of rRNA Genes:. Number of snRNA Genes:. Number of tRNA Genes:.

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AGD, the Ashbya Genome Database

What's New in AGD 3. Release 3.0 is described in an article by Gattiker et al. (2007). Upgrade to Ensembl 40. Improved interface and data. Gene Ontology annotation from SGD. Gene report pages now contain GO terms associated with the corresponding orthologues from S.cerevisiae. Comparative DNA and protein-level data is available, including synteny information in fungi. AGD now displays microarray expression data from A.gossypii. AGD, the Ashbya Genome Database. For information about A. gossypii.

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