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Algorithmic Alley

Algorithms you don't see very often. Wednesday, December 31, 2014. Reconstructing words from fragments. Suppose I give you a set of kmers. (For a definition of kmers, see my article on De Bruijn graphs. How would you determine the words that they came from? This is an interesting problem because it’s an approximation of a problem in biology called RNA Sequencing. Now suppose we have a hundred kmers in our list, so it looks like ['ific', 'arom', 'tocr', 'tice', 'sati', 'arom',]. The easiest thing to do is...

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Algorithmic Alley | algorithmicalley.com Reviews

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Algorithms you don't see very often. Wednesday, December 31, 2014. Reconstructing words from fragments. Suppose I give you a set of kmers. (For a definition of kmers, see my article on De Bruijn graphs. How would you determine the words that they came from? This is an interesting problem because it’s an approximation of a problem in biology called RNA Sequencing. Now suppose we have a hundred kmers in our list, so it looks like ['ific', 'arom', 'tocr', 'tice', 'sati', 'arom',]. The easiest thing to do is...

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Algorithmic Alley | algorithmicalley.com Reviews

https://algorithmicalley.com

Algorithms you don't see very often. Wednesday, December 31, 2014. Reconstructing words from fragments. Suppose I give you a set of kmers. (For a definition of kmers, see my article on De Bruijn graphs. How would you determine the words that they came from? This is an interesting problem because it’s an approximation of a problem in biology called RNA Sequencing. Now suppose we have a hundred kmers in our list, so it looks like ['ific', 'arom', 'tocr', 'tice', 'sati', 'arom',]. The easiest thing to do is...

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algorithmicalley.com

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Algorithmic Alley - Sunday, August 10, 2014 Entries

http://www.algorithmicalley.com/archive/2014/08/10.aspx

Algorithms you don't see very often. Sunday, August 10, 2014. Remember doing word ladder puzzles? You have to change one word into another by changing a single letter at a time, always creating a new word. As an example from Wikipedia has it:. A De Bruijn graph is sort of like that. But instead of changing a single letter at a time, you drop the first letter from word, and add a new letter at the end:. Okay, I cheated a little here. These aren’t actually. Here’s a Python function to do that:. Now, we can...

2

Algorithmic Alley - Thursday, September 9, 2010 Entries

http://www.algorithmicalley.com/archive/2010/09/09.aspx

Algorithms you don't see very often. Thursday, September 9, 2010. In Part 1 we set up a very simple scheduling model. In a more realistic schedule, of course, some jobs have to wait until other jobs are finished. The guy putting the doors on the car can’t get started on his job until the person putting in the engine is finished. Let’s set up a class modelling a constraint that says a job can’t start until another job is finished. TriggerIteration = iteration Iterations;. Given all this, we’ll have to rew...

3

Algorithmic Alley - Wednesday, December 31, 2014 Entries

http://www.algorithmicalley.com/archive/2014/12/31.aspx

Algorithms you don't see very often. Wednesday, December 31, 2014. Reconstructing words from fragments. Suppose I give you a set of kmers. (For a definition of kmers, see my article on De Bruijn graphs. How would you determine the words that they came from? This is an interesting problem because it’s an approximation of a problem in biology called RNA Sequencing. Now suppose we have a hundred kmers in our list, so it looks like ['ific', 'arom', 'tocr', 'tice', 'sati', 'arom',]. The easiest thing to do is...

4

Reconstructing words from fragments

http://www.algorithmicalley.com/archive/2014/12/31/reconstructing-words-from-fragments.aspx

Algorithms you don't see very often. Reconstructing words from fragments. Suppose I give you a set of kmers. (For a definition of kmers, see my article on De Bruijn graphs. How would you determine the words that they came from? This is an interesting problem because it’s an approximation of a problem in biology called RNA Sequencing. Now suppose we have a hundred kmers in our list, so it looks like ['ific', 'arom', 'tocr', 'tice', 'sati', 'arom',]. The easiest thing to do is simply to guess. For each...

5

Suffix Arrays

http://www.algorithmicalley.com/archive/2013/06/30/suffix-arrays.aspx

Algorithms you don't see very often. The Expectation Maximization Algorithm. For some idea of the usefulness of suffix arrays, see my suffix arrays. Blog post on my personal blog.). Here’s an implementation of a suffix array function in Python:. Sorted(range(len(str) , key=. Simple enough, for short strings. But there are going to be problems as the string length increases. That key function is probably making a copy of the string slice to pass to the sorted. Function is probably built to handle any kind...

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algorithmicalley.com

Algorithmic Alley

Algorithms you don't see very often. Wednesday, December 31, 2014. Reconstructing words from fragments. Suppose I give you a set of kmers. (For a definition of kmers, see my article on De Bruijn graphs. How would you determine the words that they came from? This is an interesting problem because it’s an approximation of a problem in biology called RNA Sequencing. Now suppose we have a hundred kmers in our list, so it looks like ['ific', 'arom', 'tocr', 'tice', 'sati', 'arom',]. The easiest thing to do is...

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algorithmically in a sentence | simple examples

In A Sentence .org. The best little site that helps you understand word usage with examples. Algorithmically in a sentence. The other thing that were doing thats more strategic is were trying to move from answers that are link based to answers that are algorithmically based, where we can actually compute the right answer. That concept, he argued, could be a key to algorithmically squeezing meaning from web pages. Use cannonry in a sentence. Use coveting in a sentence. Use drumbeater in a sentence. Bharat...

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We specialize in getting things done. Algorithmically has experience in enterprise-class .NET architecture, design, and development. We work mainly with C#, VB.NET, and Java. We've developed N-tier designs using modern technologies like ASP.NET MVC for interaction and Microsoft Entity Framework for. Past projects include an. Like algorithm for processing and normalizing millions of non-standard addresses and a code-generation framework for rapid domain modeling with the .NET stack. Get in touch with us.

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About - Algorithmically Animated

Adamantly animated about games. I’m currently a Ph.D. student in computer science at Georgia Tech. My research is in games, artificial intelligence, and (prior to this) computer animation. I also develop games in my spare time. If you’re looking for the researcher, please refer to my Research. If you’re looking for the game developer, please refer to my Games. Metroidvania Design Vignettes Shinesparking Through Sector 3. Last Hour for a Flower.

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Algorithmically Demoted – All About Youtube | Youtube Errors And Bugs

Algorithmically Demoted – All About Youtube. Youtube Errors And Bugs. Major Youtube Most Viewed Freeze. October 17, 2011. Just after the implementation of the new larger most viewed thumbnails(below), Youtube has given us another major freeze. Over 6 days now and still frozen. Great for those videos stuck in the Top 20, Unfortunate for the ones that where lined up for honors. The Global Freeze – Youtube’s most viewed frozen. September 16, 2011. Youtube’s Most Viewed Back To The Roots? September 9, 2011.

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Algorithmically Incompressible Thoughts | … or are they?

8230; or are they? Undecidability from a syntactic perspective. November 7, 2010. Robinson arithmetic, a finitely axiomatized fragment of arithmetic, is undecidable, therefore, so is classical first-order predicate logic. This is one usual way of proving the undecidability of first-order logic (with an arithmetic language). What do we mean by undecidability here? That we have no algorithm for deciding whether a formula belongs to a certain theory or not, of course, but how is this notion formalized?