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All About Bioinformatics

Hi, I'm maintaining this blog to post news, tips, ideas about bioinformatics, computational biology, next generation sequencing (NGS) and everything. Hope you will enjoy it!

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All About Bioinformatics | allaboutbioinfo.blogspot.com Reviews
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Hi, I&#39;m maintaining this blog to post news, tips, ideas about bioinformatics, computational biology, next generation sequencing (NGS) and everything. Hope you will enjoy it!
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1 all about bioinformatics
2 this paper
3 https / github.com/davidliwei/rnaseqmut
4 step 1
5 option
6 step 2
7 step 3
8 step 4
9 step 5
10 posted by
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all about bioinformatics,this paper,https / github.com/davidliwei/rnaseqmut,step 1,option,step 2,step 3,step 4,step 5,posted by,wei li,31 comments,no comments,solution,usage,getinsertsize py,detailed usage,samfile,sam/bam file,positional arguments,note
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All About Bioinformatics | allaboutbioinfo.blogspot.com Reviews

https://allaboutbioinfo.blogspot.com

Hi, I&#39;m maintaining this blog to post news, tips, ideas about bioinformatics, computational biology, next generation sequencing (NGS) and everything. Hope you will enjoy it!

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allaboutbioinfo.blogspot.com allaboutbioinfo.blogspot.com
1

All About Bioinformatics: XML_C14N error when compiling libxmlsec

http://allaboutbioinfo.blogspot.com/2013/01/xmlc14n-error-when-compiling-libxmlsec.html

Hi, I'm maintaining this blog to post news, tips, ideas about bioinformatics, computational biology, next generation sequencing (NGS) and everything. Hope you will enjoy it! Thursday, January 24, 2013. XML C14N error when compiling libxmlsec. OK, as an bioinformatician I always work with compiling and running with many different tools. Here comes with the problem: I need to install the genefilter. XMLSEC compiling errors: XML C14N 1 0 undeclared. The error message is something like:. C14nc: In function '...

2

All About Bioinformatics: RNA-Seq Read Simulator

http://allaboutbioinfo.blogspot.com/2012/02/rna-seq-read-simulator.html

Hi, I'm maintaining this blog to post news, tips, ideas about bioinformatics, computational biology, next generation sequencing (NGS) and everything. Hope you will enjoy it! Wednesday, February 8, 2012. RNA-Seq is now a common protocol to study the expression of genes or transcripts. For research purposes, there are many simulators to simulate RNA-Seq reads, like Flux Simulator. It is able to generate RNA-Seq reads that have a specified positional bias profile. The webpage of RNASeqReadSimulator is here.

3

All About Bioinformatics: February 2012

http://allaboutbioinfo.blogspot.com/2012_02_01_archive.html

Hi, I'm maintaining this blog to post news, tips, ideas about bioinformatics, computational biology, next generation sequencing (NGS) and everything. Hope you will enjoy it! Wednesday, February 8, 2012. RNA-Seq is now a common protocol to study the expression of genes or transcripts. For research purposes, there are many simulators to simulate RNA-Seq reads, like Flux Simulator. It is able to generate RNA-Seq reads that have a specified positional bias profile. The webpage of RNASeqReadSimulator is here.

4

All About Bioinformatics: Estimating paired-end read insert length from SAM/BAM files

http://allaboutbioinfo.blogspot.com/2012/04/estimating-paired-end-read-insert.html

Hi, I'm maintaining this blog to post news, tips, ideas about bioinformatics, computational biology, next generation sequencing (NGS) and everything. Hope you will enjoy it! Friday, April 6, 2012. Estimating paired-end read insert length from SAM/BAM files. This script is also able to provide a detailed distribution of read length and read span for your convenience. Please refer to the detailed usage below. This script is distributed in GitHub now. Getinsertsize.py [ SAM file -]. Read-distribution-file R...

5

All About Bioinformatics: Detecting mutations from RNA-Seq (with a demo)

http://allaboutbioinfo.blogspot.com/2013/09/detecting-mutations-from-rna-seq.html

Hi, I'm maintaining this blog to post news, tips, ideas about bioinformatics, computational biology, next generation sequencing (NGS) and everything. Hope you will enjoy it! Monday, September 16, 2013. Detecting mutations from RNA-Seq (with a demo). Detecting mutations from RNA-Seq is not a typical approach to detect mutations, but has drawn much attention in recent days. There are several reasons for that:. Here we present rnaseqmut. An easy-to-use program to detection variants in RNA-Seq read alignment...

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All About Bioinformatics

Hi, I'm maintaining this blog to post news, tips, ideas about bioinformatics, computational biology, next generation sequencing (NGS) and everything. Hope you will enjoy it! Monday, September 16, 2013. Detecting mutations from RNA-Seq (with a demo). Detecting mutations from RNA-Seq is not a typical approach to detect mutations, but has drawn much attention in recent days. There are several reasons for that:. Here we present rnaseqmut. An easy-to-use program to detection variants in RNA-Seq read alignment...

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