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Almaas Lab – Network Systems Biology

Downloads & Tools. Our group is mainly focused on basic research in two areas of systems biology, biological networks. Using mathematical and computational approaches. Read more here …]. Our group is composed of an inter-disciplinary team of researchers with backgrounds spanning biotechnology, chemistry, physics, and mathematics. Read more here …]. We make our research findings available in international peer-review journals. Go and check it out! Read more here …]. Read more here …]. Theme: Xcel by Kaira.

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Downloads & Tools. Our group is mainly focused on basic research in two areas of systems biology, biological networks. Using mathematical and computational approaches. Read more here …]. Our group is composed of an inter-disciplinary team of researchers with backgrounds spanning biotechnology, chemistry, physics, and mathematics. Read more here …]. We make our research findings available in international peer-review journals. Go and check it out! Read more here …]. Read more here …]. Theme: Xcel by Kaira.
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8 complex network analysis
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Almaas Lab – Network Systems Biology | almaaslab.nt.ntnu.no Reviews

https://almaaslab.nt.ntnu.no

Downloads & Tools. Our group is mainly focused on basic research in two areas of systems biology, biological networks. Using mathematical and computational approaches. Read more here …]. Our group is composed of an inter-disciplinary team of researchers with backgrounds spanning biotechnology, chemistry, physics, and mathematics. Read more here …]. We make our research findings available in international peer-review journals. Go and check it out! Read more here …]. Read more here …]. Theme: Xcel by Kaira.

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1

Downloads & Tools – Almaas Lab

http://almaaslab.nt.ntnu.no/index.php/resources

Downloads & Tools. Downloads & Tools. On these pages, we make software and datasets available for download, and we kindly ask that our work is cited. The journal references are given together with the specific resources. Algorithms and software for network analysis. Software for the analysis of genome-scale metabolic models. Manually curated genome-scale metabolic reconstructions. Self-consistent computational models of genetic circuits. Theme: Xcel by Kaira. Downloads & Tools.

2

Genetic circuits – Almaas Lab

http://almaaslab.nt.ntnu.no/index.php/resources/genetic-circuits

Downloads & Tools. Two mutually repressing genes. Files for the stochastic analysis of genetic circuit using the Dizzy. Full system description. Download: [ HET FULL.cmdl. Reduced system description. Download: [ HET K100.cmdl. Publication: Ghim, Almaas. Phys Rev Lett (2009). Theme: Xcel by Kaira. Downloads & Tools.

3

People – Almaas Lab

http://almaaslab.nt.ntnu.no/index.php/people

Downloads & Tools. Eivind Almaas, PhD. Professor of Systems Biology. Norwegian University of Science and Technology. PhD candidates, Postdoctoral Associates and Visitors. André Voigt, br PhD candidate. Nikolay Martyushenko, br PhD candidate. Pål Røynestad, br PhD candidate. Tjasa Kumelj, br PhD candidate. Snorre Sulheim, br PhD candidate. Pål Røynestad br M.Sc. 2016. Eivind Bø Drejer br M.Sc. 2015. Ove Øyås br M.Sc. 2015. Martin Borud br M.Sc. 2014. Jacob Prescott br 2013-2014. Theme: Xcel by Kaira.

4

Complex Network Analysis – Almaas Lab

http://almaaslab.nt.ntnu.no/index.php/resources/complex-network-analysis

Downloads & Tools. Many of the software codes available for download are intended to be executed from command line shell. List of genes present in the CSD network: [ CSD gene list.txt. Complete list of genes with gene-expression data: [ complete gene list.txt. Link-list for CSD network: [ CSD network.txt. Complete list of correlations, variance of the correlations, and CSD-scores: [ CSD complete data.txt.gz. Theme: Xcel by Kaira. Downloads & Tools.

5

Metabolic modeling – Almaas Lab

http://almaaslab.nt.ntnu.no/index.php/resources/metabolic-modeling

Downloads & Tools. Many of the programs or data files are intended to be used together with the freely available COBRA toolbox for Matlab or COBRApy for python. COBRA toolbox function for identifying the HFB. Download: [ HFB.m. Publication: Almaas, Kovacs, Oltvai, Barabasi. Nature (2004). CryptFind – a method for identifying cryptic/pseudo genes using FBA. Perl script for identifying cryptic / pseudo genes in a genome-scale metabolic model. Download: [ CryptFind.tar.gz. Download: [ gxFBA example.xml.

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Almaas Lab – Network Systems Biology

Downloads & Tools. Our group is mainly focused on basic research in two areas of systems biology, biological networks. Using mathematical and computational approaches. Read more here …]. Our group is composed of an inter-disciplinary team of researchers with backgrounds spanning biotechnology, chemistry, physics, and mathematics. Read more here …]. We make our research findings available in international peer-review journals. Go and check it out! Read more here …]. Read more here …]. Theme: Xcel by Kaira.

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