ALTANALYZE.ORG

AltAnalyze - Software for Extended Alternative Splicing Analysis

Downloaded over 10,000. Times and cited in over 75. Publications. AltAnalyze has hundreds of active users and is being actively developed as an open-source project. AltAnalyze recieves funding from the NHLBI Progenitor Cell Biology Consortium. AltAnalyze - Alternative Splicing Analysis Tool. AltAnalyze is an easy-to-use application for microarry. In addition to splicing-sensitive platforms, AltAnalyze provides comprehensive methods for the analysis of other data ( RMA summarization.

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AltAnalyze - Software for Extended Alternative Splicing Analysis | altanalyze.org Reviews

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Downloaded over 10,000. Times and cited in over 75. Publications. AltAnalyze has hundreds of active users and is being actively developed as an open-source project. AltAnalyze recieves funding from the NHLBI Progenitor Cell Biology Consortium. AltAnalyze - Alternative Splicing Analysis Tool. AltAnalyze is an easy-to-use application for microarry. In addition to splicing-sensitive platforms, AltAnalyze provides comprehensive methods for the analysis of other data ( RMA summarization.

<META> KEYWORDS

1 peer reviewed

2 rna seq

3 and metabolomics

4 and microrna targeting

5 batch effect removal

6 statistics

7 annotation

8 clustering

9 network creation

10 lineage characterization

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peer reviewed,rna seq,and metabolomics,and microrna targeting,batch effect removal,statistics,annotation,clustering,network creation,lineage characterization,alternative exon visualization,gene set enrichement,and more,or command line,wiki,tutorials,blog

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AltAnalyze - Software for Extended Alternative Splicing Analysis | altanalyze.org Reviews

https://altanalyze.org

Downloaded over 10,000. Times and cited in over 75. Publications. AltAnalyze has hundreds of active users and is being actively developed as an open-source project. AltAnalyze recieves funding from the NHLBI Progenitor Cell Biology Consortium. AltAnalyze - Alternative Splicing Analysis Tool. AltAnalyze is an easy-to-use application for microarry. In addition to splicing-sensitive platforms, AltAnalyze provides comprehensive methods for the analysis of other data ( RMA summarization.

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altanalyze.org

1

AltAnalyze Analysis Pipeline

http://www.altanalyze.org/help.htm

AltAnalyze Information and Instructions. Section 1 - Introduction. AltAnalyze (http:/ altanalyze.org) is a freely available, cross-platform application designed to assess changes in protein sequence, domain composition, and microRNA targeting from user RNA sequencing ( RNA-Seq. Http:/ code.google.com/p/altanalyze. Figure 1.1. AltAnalyze Overview. Simplified graphic illustration of the analysis steps and output files produced by AltAnalyze. ORA, over-representation analysis. A minimum of 1GB of RAM and In...

2

AltAnalyze - Software for Extended Alternative Splicing Analysis

http://www.altanalyze.org/default.html

Downloaded over 10,000. Times and cited in over 100. Publications. AltAnalyze has hundreds of active users and is being actively developed as an open-source project. AltAnalyze recieves funding from the NHLBI Progenitor Cell Biology Consortium. AltAnalyze - Comprehensive Transcriptome Analysis. AltAnalyze is an easy-to-use application for the end-to-end analysis of microarry. AltAnalyze automates every step of gene expression and splicing analysis other data ( FASTQ processing. Windows Archive (.zip).

3

AltAnalyze - User Manual

http://www.altanalyze.org/help_main.htm

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psaffrey.wordpress.com

Gene and Exon Expression Using Affymetrix Mouse Exon Arrays (MoEx) | Peter Saffrey's Weblog

https://psaffrey.wordpress.com/2011/03/15/gene-and-exon-expression-using-affymetrix-mouse-exon-arrays-moex

Peter Saffrey's Weblog. Scientific computing and bioinformatics. Laquo; numpy and NaN again. Automount USB drives – Ubuntu Server. Gene and Exon Expression Using Affymetrix Mouse Exon Arrays (MoEx). But also MAS5 absent/present calls. But it’s quite expensive and the tools aren’t very mature yet. We chose to go with Affymetrix’s mouse exon arrays. Or MoEx for short. However, using R/Bioconductor to derive RMA and MAS5 for MoEx is not as easy as the gene arrays. In R you should be able to do (crudely):.

bioinfowiki.mpg.de

Microarray, SAGE, & other Gene Expression - BISS Wiki

http://bioinfowiki.mpg.de/index.php/Microarray,_SAGE,_&_other_Gene_Expression

Microarray, SAGE, and other Gene Expression. A software system for evaluation of hybridisation experiments. Tiling Array Express (At-TAX). Is a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana. Clustering using A Priori Information via Unsupervised decision trees. Design 2 Color MicroArrays contains a few R-scripts, mainly the function optimize.MA.design which builds upon the daMA package. Gene Co-expression Analysis Toolbox.

code.google.com

altanalyze - Alternative splicing and functional prediction analysis tool - Google Project Hosting

https://code.google.com/p/altanalyze

Alternative splicing and functional prediction analysis tool. Apache License 2.0. AltAnalyze v.2.0.5-Py.zip. AltAnalyze v.2.0.5-Ubuntu.zip. AltAnalyze v.2.0.5-Win32.zip. AltAnalyze v.2.0.5-Win64.zip. AltAnalyze v.2.0.5 OSX-64bit.dmg. AltAnalyze v.2.0.6-Py.zip. AltAnalyze v.2.0.6-Ubuntu.zip. AltAnalyze v.2.0.6-Win32.zip. AltAnalyze v.2.0.6-Win64.zip. AltAnalyze v.2.0.6 OSX-64bit.dmg. AltAnalyze v.2.0.7-Py.zip. AltAnalyze v.2.0.7-Ubuntu 10.04.zip. AltAnalyze v.2.0.7-Ubuntu 12.04.zip. Data (exons and/or jun...

root2.genmapp.org

GenMAPP - Download Area

http://root2.genmapp.org/download_v2.1.php

The GenMAPP project is no longer funded or actively supported. The last version of GenMAPP was GenMAPP-CS, which is available as a beta version. More information about GenMAPP-CS here. We recommend the following open-source tools:. PathVisio is a pathway analysis tool that allows you to draw, edit and analyze biological pathways. GO-Elite identifies a minimal non-redundant set of biological ontology terms or pathways to describe a particular set of genes or metabolites.

root.genmapp.org

GenMAPP - Download Area

http://root.genmapp.org/download_v2.1.php

The GenMAPP project is no longer funded or actively supported. The last version of GenMAPP was GenMAPP-CS, which is available as a beta version. More information about GenMAPP-CS here. We recommend the following open-source tools:. PathVisio is a pathway analysis tool that allows you to draw, edit and analyze biological pathways. GO-Elite identifies a minimal non-redundant set of biological ontology terms or pathways to describe a particular set of genes or metabolites.

genmapp.org

GenMAPP - Download Area

http://www.genmapp.org/download_v2.1.php

The GenMAPP project is no longer funded or actively supported. The last version of GenMAPP was GenMAPP-CS, which is available as a beta version. More information about GenMAPP-CS here. We recommend the following open-source tools:. PathVisio is a pathway analysis tool that allows you to draw, edit and analyze biological pathways. GO-Elite identifies a minimal non-redundant set of biological ontology terms or pathways to describe a particular set of genes or metabolites.

genmapp.com

GenMAPP - Download Area

http://www.genmapp.com/download_v2.1.php

The GenMAPP project is no longer funded or actively supported. The last version of GenMAPP was GenMAPP-CS, which is available as a beta version. More information about GenMAPP-CS here. We recommend the following open-source tools:. PathVisio is a pathway analysis tool that allows you to draw, edit and analyze biological pathways. GO-Elite identifies a minimal non-redundant set of biological ontology terms or pathways to describe a particular set of genes or metabolites.

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AltAnalyze Transcriptome Analysis

altanalyze.org

AltAnalyze - Software for Extended Alternative Splicing Analysis

Downloaded over 10,000. Times and cited in over 75. Publications. AltAnalyze has hundreds of active users and is being actively developed as an open-source project. AltAnalyze recieves funding from the NHLBI Progenitor Cell Biology Consortium. AltAnalyze - Alternative Splicing Analysis Tool. AltAnalyze is an easy-to-use application for microarry. In addition to splicing-sensitive platforms, AltAnalyze provides comprehensive methods for the analysis of other data ( RMA summarization.

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