APE-PACKAGE.IRD.FR

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Stable and Testing Versions. Analysis of Phylogenetics and Evolution with R. Analysis of Phylogenetics and Evolution. Ape is a package written in R. For the analysis of phylogenetics and evolution. It is reasonably used within the community of evolutionary biologists for data analysis and as a framework for the development of new analytical methods. Since 2003, ape has been cited more than 2000 times, and more than 100 R packages depending on ape have been released on CRAN. Computing times are reasonably...

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APE home page | ape-package.ird.fr Reviews

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Stable and Testing Versions. Analysis of Phylogenetics and Evolution with R. Analysis of Phylogenetics and Evolution. Ape is a package written in R. For the analysis of phylogenetics and evolution. It is reasonably used within the community of evolutionary biologists for data analysis and as a framework for the development of new analytical methods. Since 2003, ape has been cited more than 2000 times, and more than 100 R packages depending on ape have been released on CRAN. Computing times are reasonably...

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APE home page | ape-package.ird.fr Reviews

https://ape-package.ird.fr

Stable and Testing Versions. Analysis of Phylogenetics and Evolution with R. Analysis of Phylogenetics and Evolution. Ape is a package written in R. For the analysis of phylogenetics and evolution. It is reasonably used within the community of evolutionary biologists for data analysis and as a framework for the development of new analytical methods. Since 2003, ape has been cited more than 2000 times, and more than 100 R packages depending on ape have been released on CRAN. Computing times are reasonably...

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ape-package.ird.fr

1

APE home page

http://ape-package.ird.fr/ape_development.html

Stable and Testing Versions. Analysis of Phylogenetics and Evolution with R. Some time ago, I posted some code to visualize tree in ape: it is here. The following document explains how trees are coded in R, and how this data structure can be passed into C. Definition of Formats for Coding Phylogenetic Trees in R. The coding scheme used in ape to code DNA sequences is explained in the next document. Its aim is to provide fast algorithms and efficient programs for comparing sequences:. The API to ape C code.

2

APE home page

http://ape-package.ird.fr/ape_history.html

Stable and Testing Versions. Analysis of Phylogenetics and Evolution with R. The first version of ape was released on August 27, 2002. The current version is 4.1. And has been released on February 14, 2017. There have been, up to now, 88 versions of ape, so check-out regularly and update your packages (see Installation. You can find a detailed log file. Listing all the changes (new features, bug fixes, .) made to ape since the first release.

3

ape's FAQ

http://ape-package.ird.fr/ape_faq.html

Stable and Testing Versions. Analysis of Phylogenetics and Evolution with R. How do I know which version of ape I am using? Why don't you develop a GUI for ape? I posted a query about ape on the r-help mailing list, but got no answer. What tree file formats are supported by ape? I have a tree file in Newick format where the taxa names are quoted because they contain special characters (parentheses, comma, .): is that a problem? I have read a tree in R with ape, but how do I extract branch lengths? But wh...

4

APE home page

http://ape-package.ird.fr/ape_links.html

Stable and Testing Versions. Analysis of Phylogenetics and Evolution with R. Http:/ www.atgc-montpellier.fr/index.php? ATGC: Montpellier bioinformatics platform. Http:/ pbil.univ-lyon1.fr/R/html/thema.html. Http:/ pbil.univ-lyon1.fr/R/enseignement.html. R's pages at the University of Lyon 1, with many documents on R (mostly in French). Http:/ forums.cirad.fr/logiciel-R/. Forums on R with many useful information (in French). Http:/ www.mnhn.fr/semin-r/. A mailinglist on R (in French).

5

APE home page

http://ape-package.ird.fr/index-fr.html

Stable and Testing Versions. Analysis of Phylogenetics and Evolution with R. Analyse phylogénétique et évolutive. Ape est un logiciel écrit dans le langage R. Et qui dépendent de ape ont été publiés sur le CRAN. Pour en savoir sur ape, veuillez visiter les pages de ce site. Pegas est un logiciel pour les analyses de génétique des populations et évolutive ; il est un compagnon de ape. Pour en savoir plus sur pegas, veuillez visiter sa page sur ce site. Toutes les analyses (préparation des données, simulat...

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thesefewlines.wordpress.com

Visualizing evolutionary dynamics with ggmuller – These few lines

https://thesefewlines.wordpress.com/2016/08/20/how-to-ggmuller

Evolution, ecology and cancer. Visualizing evolutionary dynamics with ggmuller. A how-to guide for making beautiful plots of your data. Readers of experimental evolution studies by Richard Lenski, Jeffrey Barrick and others, or of cancer evolution reviews, will have seen stacked area plots that combine information about frequency dynamics and phylogeny. The example below is from a recent preprint. Such diagrams are sometimes termed Muller plots in honour of Hermann Joseph Muller (of ratchet. Encouraged b...

thesefewlines.wordpress.com

Rob Noble – These few lines

https://thesefewlines.wordpress.com/author/robjohnnoble

Evolution, ecology and cancer. The Box-Einstein surface of mathematical models. As a mathematical modeller in evolutionary biology, my seminar bingo card. Has four prime boxes. Watching a talk about evolution, I count down the minutes to the first appearance of Dobzhansky’s nothing in biology. Quote (or some variant thereof) or a picture of Darwin’s I think. Sketch. For mathematical modelling, it’ll be either Albert Einstein or George Box:. All models are wrong but some are useful – George Box. A key thi...

nicolascampione.weebly.com

Quantitative Methods - Nicolás Campione

http://nicolascampione.weebly.com/quantitative-methods.html

Postdoctoral Researcher, Uppsala University. Quantitative Methods for the Palaeobiologist. This section is meant to provide links to free programmes, which I use (and recommend) for the study of variation, phylogenetics, and macroevolution. This section will be continuously updated. NB If you decide to use R, and particularly if you are using it through a Windows-based platform, I recommend using it through RStudio. Better user interface.in my opinion. For links associated with the basic R. If you find a...

justinbagley.org

August 2015 - Justin C. Bagley - Postdoctoral Researcher

http://www.justinbagley.org/date/2015/08

Justin C. Bagley – Postdoctoral Researcher. UnB Dept. de Zoologia. Scientific Presentations: Posters and Talks. Research Advice & Resources. General Ecology – BIOL 3700. Topics in Zoology: Integrative Taxonomy – ZOO 397806. Merging ecology, evolution, and historical biogeography. You are here :. Justin C. Bagley - Postdoctoral Researcher. Monthly archives for 2015/08. A funny thing about IMa2 output (a lost 2011 blog post). August 31, 2015. And I mean that. I. Like this program and have read all of the p...

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アーペシャンプーケア " /. アーペトリートメントケア " /. アーペオリジナル famile ファミーユ長皿. アーペオリジナル famile ファミーユボウルS. アーペオリジナル famile ファミーユ丸皿S. アーペオリジナル famile ファミーユボウルL. アーペオリジナル famile ファミーユ長小皿. アーペオリジナル famile ファミーユタンブラー. アーペオリジナル famile ファミーユマグカップ. アーペオリジナル famile ファミーユライスボウル. アーペオリジナル famile ファミーユパスタ皿. かまわぬてぬぐいアーペティーカップ色替え. かまわぬてぬぐいアーペみつばち色替え.

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ape-package.ird.fr

APE home page

Stable and Testing Versions. Analysis of Phylogenetics and Evolution with R. Analysis of Phylogenetics and Evolution. Ape is a package written in R. For the analysis of phylogenetics and evolution. It is reasonably used within the community of evolutionary biologists for data analysis and as a framework for the development of new analytical methods. Since 2003, ape has been cited more than 2000 times, and more than 100 R packages depending on ape have been released on CRAN. Computing times are reasonably...

ape-paduri.ro

Departamentul pentru Ape, Păduri şi Piscicultura

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APE Park and Fly - Park & Fly in Hamburg am Flughafen -Startseite

Sie fahren entspannt zum Terminal, unsere Mitarbeiter warten dort auf Sie und nehmen das Auto in Empfang. Wenn Sie zurückkommen wartet Ihr Wagen bereits vor dem Terminal auf Sie. Entspannter geht es kaum. Ob am Flughafen Hamburg, am Flughafen Köln-Bonn oder den Cruise Terminals Altona, HafenCity und Steinwerder, wir holen Ihren Wagen vor Ort ab und bringen ihn zu Ihrer Rückkehr wieder zu Ihnen. Kontaktieren Sie uns unter 49 (0) 40 69 27 69 10 oder über unser Formular. Wir möchten Ihnen Ihre Geschäftsreis...

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APE Pasteur Cappelle-la-Grande

Forum des membres de l’APE. Posté dans Vie scolaire. Bonsoir, La semaine fût chargée pour les enfants * chants de Noël mercredi pour les maternelles et aujourd’hui pour les primaires devant la municipalité. * Visite du père Noël jeudi après midi. Nous lui avions commandé 8 draisiennes pour les maternelles, et des livres choisis par les enfants pour les primaires. * L’APE a offert…. Posté dans Actions APE. Photos des articles de Noël mis en vente. Posté dans Actions APE. Bonsoir, La fin d’année cale...

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PRESENTATION DE L'A.P.E. Elle diffuse l’information auprès des familles. Elle les représente auprès de l’Administration du collège et des pouvoirs publics. Elle aide les délégués des parents qui siègent au Conseil d’Administration et aux Conseils de Classes. Elle procède à des démarches pour qu’une solution soit apportées aux problèmes de vie scolaire. À la rentrée 2012. Réunion le 7/02/2012 à 18H30. LE MOT DU PRESIDENT. Bonne année scolaire à tous. Résultats du sondage. Nombre de votants : 1.