arjunprasad.net

Arjun Prasad at arjunprasad.net

I'm a biologist working in genome sequencing, phylogenetics, and comparative genomics in Washington, DC. Arjun "at" arjunprasad.net. Some links to resources I created or use. A little script to do joins on columns of whitespace delimited text files. Script for picking overgo hypridization probes from blast/blastz alignments. To find short highly conserved regions from multiple sequence alignments. A little perl script using BioPerl to remove taxa from newick formatted trees. A morse code tutor. Thomas JW...

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Arjun Prasad at arjunprasad.net | arjunprasad.net Reviews

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I'm a biologist working in genome sequencing, phylogenetics, and comparative genomics in Washington, DC. Arjun at arjunprasad.net. Some links to resources I created or use. A little script to do joins on columns of whitespace delimited text files. Script for picking overgo hypridization probes from blast/blastz alignments. To find short highly conserved regions from multiple sequence alignments. A little perl script using BioPerl to remove taxa from newick formatted trees. A morse code tutor. Thomas JW...

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1 arjunprasad net

2 arjun prasad

3 email

4 selectrowbycol

5 soop

6 exactplus

7 web application

8 and perl script

9 fixreadnamesinposmap

10 prune newick

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arjunprasad net,arjun prasad,email,selectrowbycol,soop,exactplus,web application,and perl script,fixreadnamesinposmap,prune newick,nilex morse tutor,useful links,to other resources,some recipes,by popular request,publications,prasad ab,supplementary data

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Arjun Prasad at arjunprasad.net | arjunprasad.net Reviews

https://arjunprasad.net

I'm a biologist working in genome sequencing, phylogenetics, and comparative genomics in Washington, DC. Arjun "at" arjunprasad.net. Some links to resources I created or use. A little script to do joins on columns of whitespace delimited text files. Script for picking overgo hypridization probes from blast/blastz alignments. To find short highly conserved regions from multiple sequence alignments. A little perl script using BioPerl to remove taxa from newick formatted trees. A morse code tutor. Thomas JW...

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Useful links I often forget. A java program to execute many common tasks in phylogenetic analysis at the command line. Aka TBA, a genome scale multiple local alignment program.). Download from Miller Lab download page. Of MAF format (which TBA uses as its output file format. An incredibly fast, memory efficient, frequently updated, MPI and PTHREADS parallelized, maximum likelihood phylogenetic inference program. I could find also. Web based RAxML servers. For the console version. Is a document formatting...

3

Nilex Morse Tutor

http://www.arjunprasad.net/morse_tutor

Alpha, Numeric, Syms. Loading. (this app requires JavaScript). This program teaches you to receive Morse code. It starts with a few letters and adds more when it sees that you are ready. The program won't teach you to send code except that sending is easy to learn on your own once you know how the letters sound. You can also choose to learn alphabetically. It probably doesn't make much difference, but I'd reccommend you pick one and stick to it. In the top-right, set the Speed. The program shows blue bar...

4

Supplementary Data for Prasad et al. 2008

http://www.arjunprasad.net/mbe08/index.html

Confirming the Phylogeny of Mammals by Use of Large Comparative Sequence Datasets. Prasad AB, Allard MW, NISC Comparative Sequencing Program, Green ED. Molecular Biology and Evolution. 2008 Sep;25(9):1795-808. Supplementary Data for Prasad et al. 2008. In gzipped FASTA format. Conserved non-coding sequence alignment. In gzipped FASTA format. Assembled sequence contigs for each species. As a gzipped tar archive of FASTA files. As a human readable text file. Some additional alignment formats by request:.

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DNA- some interesting facts! Fast Track to Vaccines. May 14, 2011. Extraction of DNA from banana. What do you have in common with a banana? Even though we might not look alike, all living things bananas and people included are made up of the same basic material. Just like us, banana plants. Half cup of water. Dishwashing soap or detergent. Place your bottle of rubbing alcohol into the refrigerator or freezer and let it chill for the duration of this experiment. On a hard surface like a tabletop or kitche...

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Arjun Prasad at arjunprasad.net

I'm a biologist working in genome sequencing, phylogenetics, and comparative genomics in Washington, DC. Arjun "at" arjunprasad.net. Some links to resources I created or use. A little script to do joins on columns of whitespace delimited text files. Script for picking overgo hypridization probes from blast/blastz alignments. To find short highly conserved regions from multiple sequence alignments. A little perl script using BioPerl to remove taxa from newick formatted trees. A morse code tutor. Thomas JW...

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