AROMA-PROJECT.ORG

The Aroma Project

Skip to main content. News and recent updates:. Sept 13, 2017: aroma.core 3.1.1. Released (fixes minor incompatibility with new future 1.6.1. June 3, 2017: future 1.5.0. And future.batchtools 0.5.0. Provides parallel and compute-cluster processing. March 23, 2017: aroma.affymetrix 3.1.0. Nov 11, 2016: PSCBS 0.62.0. Jan 11, 2016: The Aroma Project turns 10 years! Oct 28, 2015: aroma.cn 1.6.1 released. An open-source R framework for your microarray analysis. Number of arrays: unlimited. Probe-level modelin...

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Henrik Bengtsson

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he●●●●●@braju.com

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Henrik Bengtsson

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The Aroma Project | aroma-project.org Reviews

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Skip to main content. News and recent updates:. Sept 13, 2017: aroma.core 3.1.1. Released (fixes minor incompatibility with new future 1.6.1. June 3, 2017: future 1.5.0. And future.batchtools 0.5.0. Provides parallel and compute-cluster processing. March 23, 2017: aroma.affymetrix 3.1.0. Nov 11, 2016: PSCBS 0.62.0. Jan 11, 2016: The Aroma Project turns 10 years! Oct 28, 2015: aroma.cn 1.6.1 released. An open-source R framework for your microarray analysis. Number of arrays: unlimited. Probe-level modelin...

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The Aroma Project | aroma-project.org Reviews

https://aroma-project.org

Skip to main content. News and recent updates:. Sept 13, 2017: aroma.core 3.1.1. Released (fixes minor incompatibility with new future 1.6.1. June 3, 2017: future 1.5.0. And future.batchtools 0.5.0. Provides parallel and compute-cluster processing. March 23, 2017: aroma.affymetrix 3.1.0. Nov 11, 2016: PSCBS 0.62.0. Jan 11, 2016: The Aroma Project turns 10 years! Oct 28, 2015: aroma.cn 1.6.1 released. An open-source R framework for your microarray analysis. Number of arrays: unlimited. Probe-level modelin...

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v1.aroma-project.org

An open-source R framework for your microarray analysis | aroma-project.org

Aromaaffymetrix 2.12.0. Aromacn 1.5.0. PSCBS 0.43.0. June 8, 2014: PSCBS 0.43.0 released. March 9, 2014: aroma.affymetrix 2.12.0 released. Feb 4, 2014: PSCBS 0.40.4 released. Oct 18, 2013: aroma.affymetrix 2.11.1 released. Oct 17, 2013: aroma.cn 1.5.0 released. An open-source R framework for your microarray analysis. Number of arrays: unlimited. System requirements: As low as 1GB RAM, any operating system. Chip types: all Affymetrix. Immediate support for custom CDFs. Paired and non-paired copy-number an...

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aroma-project.org

1

Aroma: Chip types

http://www.aroma-project.org/chipTypes/index.html

Skip to main content. DNA Copy Number and Genotyping arrays/array plates. Mapping50K Hind240 & Mapping50K Xba240. Mapping250K Nsp & Mapping250K Sty. RNA Exon and Gene-level arrays/array plates. HG U95A, HG U95B, HG U95C, HG U95D, HG U95E. HT HG-U133A and HT HG-U133B. HT HG-U133 Plus PM. Hu6500 [REQUEST: More information on this chip type is needed]. Hum6000 [REQUEST: More information on this chip type is needed]. Dm tiling2 MR v01. Sc03b MF v04 (S. cerevisiae). Axiom Genotyping Solution chip types.

2

Aroma: Features

http://www.aroma-project.org/features/index.html

Skip to main content. MOVE THE BELOW TO SUBPAGE(S):. Number of arrays: unlimited. Chip types: all Affymetrix chip types with a CDF, e.g. SNP, exon, and gene expression. Immediate support for custom CDFs, e.g. Brainarray and AffyProbeMiner. File formats: Works directly with CEL and CDF files (all versions; text/ASCII, binary/XDA, binary/Calvin). Pre-processing: Background correction, allelic cross-talk calibration, quantile normalization etc. Post-processing: PCR fragment-length normalization. Paired and ...

3

Aroma: Resources

http://www.aroma-project.org/resources/index.html

Skip to main content. VOLUNTEERS: Links to Google Docs that should be migrated here]. The Aroma Project (http:/ www.aroma-project.org/). Henrik Bengtsson : Powered by RSP. Go to old page.

4

Aroma: About

http://www.aroma-project.org/about/index.html

Skip to main content. Main author and maintainer. Dept of Epidemiology and Biostatistics, UCSF (prev. Dept of Statistics, UC Berkeley). Co-authors and major contributors (in alphabetic order). Pacific Biosciences (prev. Dept of Biostatistics, UC Berkeley). John Hopkins (prev. Dept of Biostatistics, UC Berkeley). Laboratoire Statistique et Génome, CNRS, France (prev. Dept of Statistics, UC Berkeley). Aromacn, aroma.cn.eval, CalMaTe, PSCBS, documentation. Dept of Statistics, UC Berkeley. Go to old page.

5

Aroma: Demos

http://www.aroma-project.org/demos/index.html

Skip to main content. Spatial images of raw probe (sqrt) intensities using a black-to-yellow color map. Spatial images of (log2) RMA residuals using a rainbow color map. Negative and positive residuals are displayed separately. Total (log2) copy-number ratios along the genome chromosome by chromosome. Total (log2) copy-number ratios along the genome chromosome by chromosome. The Aroma Project (http:/ www.aroma-project.org/). Henrik Bengtsson : Powered by RSP. Go to old page.

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cbc.ucsf.edu

CBC: Software and Computing Resources

http://cbc.ucsf.edu/software/index.html

University of California San Francisco. UCSF Computational Biology Core (CBC). Software and Computing Resources. We contribute to several open-source projects including R. And core member Henrik Bengtsson is the creator of the Aroma Project. Being parts of these projects helps us to keep up to date with the field and to get invaluable feedback on our own software and work. Here are some of the software tools that we have developed ourselves or contributed to:. Preprocessing of spotted microarray data.

v1.aroma-project.org

Frequently Asked Questions | aroma-project.org

http://v1.aroma-project.org/FAQ

Aromaaffymetrix 2.12.0. Aromacn 1.5.0. PSCBS 0.43.0. FAQ 2010-06-29: Why do so few methods have a help() page? A: The main source of documentation for the aroma framework, is the http:/ www.aroma-project.org/. To the online as well as help-page documentation. FAQ 2008-03-26: Why do you not want to answer questions sent to your private email address? A: Please post all questions related to aroma.affymetrix to the aroma-affymetrix@googlegroups.com. FAQ 2007-07-13: Hmm. why does R crash (core dump)? A: The ...

braju.com

braju.com - R software by Henrik Bengtsson

http://www.braju.com/R

R software by Henrik Bengtsson. Henrik Bengtsson, 2012-05-04. Please know that the packages that I am actively developing are available on CRAN. Eg RmethodsS3, R.oo, R.utils, R.cache, R.devices, R.rsp, R.matlab, matrixStats, aroma.light, aroma.affymetrix, aroma.cn, aroma.core, and PSCBS. I am a co-developer of other packages, e.g. affxparser, ACNE and calmate. I also maintain the Aroma Project. Which provides a suite of packages (of which the majority of them are available from CRAN and Bioconductor).

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The Aroma Project

Skip to main content. News and recent updates:. Sept 13, 2017: aroma.core 3.1.1. Released (fixes minor incompatibility with new future 1.6.1. June 3, 2017: future 1.5.0. And future.batchtools 0.5.0. Provides parallel and compute-cluster processing. March 23, 2017: aroma.affymetrix 3.1.0. Nov 11, 2016: PSCBS 0.62.0. Jan 11, 2016: The Aroma Project turns 10 years! Oct 28, 2015: aroma.cn 1.6.1 released. An open-source R framework for your microarray analysis. Number of arrays: unlimited. Probe-level modelin...

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ａｒｏｍａで幸運体質に | アロマを生活に取り入れることによって訪れるラッキーで楽しい毎日を！

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