aspergillusgenome.org

Aspergillus Genome Database

Laboratory Strains and Lineage. AspGD is an organized collection of genetic and molecular biological information about the filamentous fungi of the genus Aspergillus. Among its many species, the genus contains an excellent model organism ( A. nidulans. Or its teleomorph Emericella nidulans. An important pathogen of the immunocompromised ( A. fumigatus. An agriculturally important toxin producer ( A. flavus. And two species used in industrial processes ( A. niger. Upcoming Meetings and Courses. PYFF6 - 6t...

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Aspergillus Genome Database | aspergillusgenome.org Reviews

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Laboratory Strains and Lineage. AspGD is an organized collection of genetic and molecular biological information about the filamentous fungi of the genus Aspergillus. Among its many species, the genus contains an excellent model organism ( A. nidulans. Or its teleomorph Emericella nidulans. An important pathogen of the immunocompromised ( A. fumigatus. An agriculturally important toxin producer ( A. flavus. And two species used in industrial processes ( A. niger. Upcoming Meetings and Courses. PYFF6 - 6t...

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3 how to cite

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6 go term finder

7 go slim mapper

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Aspergillus Genome Database | aspergillusgenome.org Reviews

https://aspergillusgenome.org

Laboratory Strains and Lineage. AspGD is an organized collection of genetic and molecular biological information about the filamentous fungi of the genus Aspergillus. Among its many species, the genus contains an excellent model organism ( A. nidulans. Or its teleomorph Emericella nidulans. An important pathogen of the immunocompromised ( A. fumigatus. An agriculturally important toxin producer ( A. flavus. And two species used in industrial processes ( A. niger. Upcoming Meetings and Courses. PYFF6 - 6t...

INTERNAL PAGES

aspergillusgenome.org

1

GO Resources

http://www.aspergillusgenome.org/GOContents.shtml

Laboratory Strains and Lineage. Help page that explains the philosophy of GO, provided by Saccharomyces. SGD tutorial that highlights pages and tools that use GO annotations to familiarize users with the Gene Ontology (GO). This tool determines to which GO-slim terms a set of Aspergillus. This tool determines the signficant GO terms that a set of Aspergillus. Genes shares in common. AspGD GO File Downloads. Files containing GO curation and other GO-related information are available for download from AspGD.

2

AspGD Pattern Matching

http://www.aspergillusgenome.org/cgi-bin/PATMATCH/nph-patmatch

Laboratory Strains and Lineage. Pattern Matching allows you to search for short (. If you are searching for a sequence 20 bp or aa with no degenerate positions, please use BLAST, which is much faster. Pattern Matching allows for ambiguous characters, mismatches, insertions and deletions, but does not do alignments and so is not a replacement for BLAST. Please note, also, that PatMatch will not find overlapping hits. Your comments and suggestions are appreciated: Send a Message to AspGD. If DNA, Strand:.

3

Index of /download/sequence

http://www.aspergillusgenome.org/download/sequence

A acidus CBS 106 47/. A brasiliensis CBS 101740/. A carbonarius ITEM 5010/. A clavatus NRRL 1/. A flavus NRRL 3357/. A glaucus CBS 516 65/. A nidulans FGSC A4/. A niger ATCC 1015/. A niger CBS 513 88/. A tubingensis CBS 134 48/. A wentii DTO 134E9/. N fischeri NRRL 181/.

4

Aspergillus nidulans FGSC A4 Genome Snapshot/Overview

http://www.aspergillusgenome.org/cache/A_nidulans_FGSC_A4_genomeSnapshot.html

Laboratory Strains and Lineage. Aspergillus nidulans FGSC A4. This page provides information on the status of the A. nidulans FGSC A4. Genome. Data on this page are updated once a day. All the data displayed on this page are available in one or more files (Chromosomal Feature File; GO Annotations File) on the AspGD Download Data. Page The Advanced Search. Tool can also be used to retrieve chromosomal features that match specific criteria. 1 Graphical View of Protein Coding Genes. 9474 ORFs, 88.65%. Page ...

5

Aspergillus fumigatus Af293 Genome Snapshot/Overview

http://www.aspergillusgenome.org/cache/A_fumigatus_Af293_genomeSnapshot.html

Laboratory Strains and Lineage. This page provides information on the status of the A. fumigatus Af293. Genome. Data on this page are updated once a day. All the data displayed on this page are available in one or more files (Chromosomal Feature File; GO Annotations File) on the AspGD Download Data. Page The Advanced Search. Tool can also be used to retrieve chromosomal features that match specific criteria. 1 Graphical View of Protein Coding Genes. 3 Summary of Chromosome Sequence and Annotation Updates.

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fungidb.org

FungiDB: The Fungal and Oomycete Genomics Resource

http://fungidb.org/fungidb/queries_tools.jsp;jsessionid=115D067385E6B30B109B22C4A385A986

Publications on EuPathDB sites. Submitting data to FungiDB. How to submit data to us. EuPathDB Data Submission and Release Policies. How to cite us. Publications that Use our Resources. EuPathDB Brochure in Chinese. NCBI's Glossary of Terms. Text, IDs, Organism. Text (product name, notes, etc.). Text (search product name, notes, submitter etc.). Search for Genomic Sequences. Search for Genomic Segments (DNA Motif). Differences Within a Group of Isolates. Differences Between Two Groups of Isolates. Open l...

jrahutchins.net

Jim Hutchins - Bioinformatics links and tools

http://www.jrahutchins.net/bioinfo

Bioinformatics links and tools. This page is currently being reorganised for consistency with my review article:. What’s that gene (or protein)? Online resources for exploring functions of genes, transcripts, and proteins. Mol Biol. Cell. 8 1187-1201; doi:10.1091/mbc.E13-10-0602. Invited Technical Perspective article. Download PDFs of Main Article and Supplementary Materials. Online Mendelian Inheritance in Man (OMIM). Hosted by the NCI. S Cancer Genome Anatomy Project. 3 Homologues and Evolution. Batch ...

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aspergillusgenome.org

Aspergillus Genome Database

Laboratory Strains and Lineage. AspGD is an organized collection of genetic and molecular biological information about the filamentous fungi of the genus Aspergillus. Among its many species, the genus contains an excellent model organism ( A. nidulans. Or its teleomorph Emericella nidulans. An important pathogen of the immunocompromised ( A. fumigatus. An agriculturally important toxin producer ( A. flavus. And two species used in industrial processes ( A. niger. Upcoming Meetings and Courses. PYFF6 - 6t...

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