aspgd.org

Aspergillus Genome Database

Laboratory Strains and Lineage. AspGD is an organized collection of genetic and molecular biological information about the filamentous fungi of the genus Aspergillus. Among its many species, the genus contains an excellent model organism ( A. nidulans. Or its teleomorph Emericella nidulans. An important pathogen of the immunocompromised ( A. fumigatus. An agriculturally important toxin producer ( A. flavus. And two species used in industrial processes ( A. niger. Upcoming Meetings and Courses. PYFF6 - 6t...

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Aspergillus Genome Database | aspgd.org Reviews

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Laboratory Strains and Lineage. AspGD is an organized collection of genetic and molecular biological information about the filamentous fungi of the genus Aspergillus. Among its many species, the genus contains an excellent model organism ( A. nidulans. Or its teleomorph Emericella nidulans. An important pathogen of the immunocompromised ( A. fumigatus. An agriculturally important toxin producer ( A. flavus. And two species used in industrial processes ( A. niger. Upcoming Meetings and Courses. PYFF6 - 6t...

<META> KEYWORDS

1 test this

2 site map

3 how to cite

4 blast

5 sybil

6 go term finder

7 go slim mapper

8 text search

9 primers

10 patmatch

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test this,site map,how to cite,blast,sybil,go term finder,go slim mapper,text search,primers,patmatch,advanced search,jbrowse or genomeview,retrieve reads,gbrowse,a nidulans,a fumigatus,a niger,a oryzae,sequence,gene/seq resources,genome versions,tools

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Aspergillus Genome Database | aspgd.org Reviews

https://aspgd.org

Laboratory Strains and Lineage. AspGD is an organized collection of genetic and molecular biological information about the filamentous fungi of the genus Aspergillus. Among its many species, the genus contains an excellent model organism ( A. nidulans. Or its teleomorph Emericella nidulans. An important pathogen of the immunocompromised ( A. fumigatus. An agriculturally important toxin producer ( A. flavus. And two species used in industrial processes ( A. niger. Upcoming Meetings and Courses. PYFF6 - 6t...

INTERNAL PAGES

aspgd.org

1

About AspGD

http://www.aspgd.org/AboutContents.shtml

Laboratory Strains and Lineage. Genome Database (AspGD) is an organized collection of genetic and molecular biological information about the filamentous fungi of the genus Aspergillus. Among its many species, the genus contains an excellent model organism ( A. nidulans. Or its teleomorph Emericella nidulans. An important pathogen of the immunocompromised ( A. fumigatus. An agriculturally important toxin producer ( A. flavus. And two species used in industrial processes ( A. niger. For A fumigatus Af293.

2

References Added to AspGD in the past week, since 2016-08-12

http://www.aspgd.org/cache/NewPapersThisWeek.html

Laboratory Strains and Lineage. References Added to AspGD in the past week, since 2016-08-12. Send a Message to the AspGD Curators. Please use the following reference. Arnaud MB, Cerqueira GC, Inglis DO, Skrzypek MS, Binkley J, Chibucos MC, Crabtree J, Howarth C, Orvis J, Shah P, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G, and Wortman JR (2012). The Aspergillus. D653-9; see How to cite AspGD.

3

Help Resources

http://www.aspgd.org/HelpContents.shtml

Laboratory Strains and Lineage. A brief description of AspGD resources and tools, organized by topic. Links to help documentation. Compares and contrasts similar resources. Getting Started with AspGD. Common uses of AspGD. Information about the various types of gene names/identifiers that are in use. Guidelines for registering a new gene name, as agreed upon by the members of the research community. Documentation about search tools in AspGD. Additional tool-specific documentation is available:. A guide t...

4

Aspergillus fumigatus Af293 Genome Snapshot/Overview

http://www.aspgd.org/cache/A_fumigatus_Af293_genomeSnapshot.html

Laboratory Strains and Lineage. This page provides information on the status of the A. fumigatus Af293. Genome. Data on this page are updated once a day. All the data displayed on this page are available in one or more files (Chromosomal Feature File; GO Annotations File) on the AspGD Download Data. Page The Advanced Search. Tool can also be used to retrieve chromosomal features that match specific criteria. 1 Graphical View of Protein Coding Genes. 3 Summary of Chromosome Sequence and Annotation Updates.

5

Aspergillus oryzae RIB40 Genome Snapshot/Overview

http://www.aspgd.org/cache/A_oryzae_RIB40_genomeSnapshot.html

Laboratory Strains and Lineage. This page provides information on the status of the A. oryzae RIB40. Genome. Data on this page are updated once a day. All the data displayed on this page are available in one or more files (Chromosomal Feature File; GO Annotations File) on the AspGD Download Data. Page The Advanced Search. Tool can also be used to retrieve chromosomal features that match specific criteria. 1 Graphical View of Protein Coding Genes. 3 Summary of Chromosome Sequence and Annotation Updates.

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intern.mikrobiologie.tu-berlin.de

Useful Links

http://intern.mikrobiologie.tu-berlin.de/index.php/useful-links

You are here: . Synthetic Biology of Antibiotics production 2014. DEO Joint Genome Institute. ICSB 2014 - The International Conference on Systems Biology. EMBL Conference, Frontiers in Fungal Systems Biology. Marie Curie Alumni Association. EMBO Conference, From Functional Genomics to Systems Biology. 28th Fungal Genetics Conference 2015. 6th European Conference on Prokaryotic and Fungal Genomics. MyK2015 and 1st International Symposium of the CRC/Transregio FungiNet. European Antibiotic Awareness Day.

geneontology.org

GO Slim and Subset Guide | Gene Ontology Consortium

http://geneontology.org/GO.slims.shtml

Skip to main content. Annotation Tools, Downloads, and Beyond. GO Slim and Subset Guide. What is a GO slim? Map2Slim option in OWLTools. What is a GO slim? GO slims are cut-down versions of the GO ontologies containing a subset of the terms in the whole GO. They give a broad overview of the ontology content without the detail of the specific fine grained terms. Maintained GO slims for download. Generic GO slim Developed by GO Consortium. Plant slim Developed by The Arabidopsis Information Resource. That ...

fgsc.net

Aspergillus

http://www.fgsc.net/Aspergillus/asperghome.html

Knock- Out Cassettes for A. nidulans. Cloning tools and libraries. 9679; Committee (AGRPC). Lesions and how to deal with them. The Searchable Aspergillus Bibliography. Strains from E. Kafer. Care and feeding of Aspergillus. Large Scale DNA Prep. DNA from spores for PCR. RNA Prep with TriZOL. Spore PCR with pfu. Other protocols are available on the general methods page. And on the Neurospora protocol page. For student poster prizes those pictured L to R are. Amanda Fischer (Judge, Novozymes. 2014-2016, Ge...

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Steinbach Lab - Funding / Visitors

http://www.steinbachlab.org/funding-visitors.html

Will never be the same twice. We welcome new students, post-doctoral fellows, and visiting scientists to the laboratory to learn new skills or develop novel techniques. For available options and funding. Following are some of the institutions and organizations that have supported research in the Steinbach lab over the years. The International Pediatric Fungal Network is a multi-national NIH-funded consortium that Bill Steinbach directs to pursue clinical epidemiology, diagnostic biomarker, and comparativ...

vertibase.org

VertiBase.org - The Verticillium Database

http://www.vertibase.org/Project/resourcesAnnotation.php

Resources for Manual Annotation. Genome Browser (Uni Greifswald). Web Site Usage Guide. Resources for the annotation. Available resources for the annotation:. Annotation Summary Verticillium longisporum. SummaryAnnotation au16 2012-10-05.xlsx. SummaryAnnotation au16 2012-09-19.xlsx. SummaryAnnotation au16 2012-09-05.xlsx. 43 au17 to au16. Vlongisporum-43 au17.mapping to au16.long 2012-08-29.xlsx. Vlongisporum-43 au16.genes with alternative transcripts 2012-08-29.csv. Saccharomyces Genome Database (SGD).

futureomics.com

Blog Archives - Futureomics

http://www.futureomics.com/blog/archives/03-2013

Back from FGC 2013. Came back on Sunday from the FGC 2013. Learnt a lot from some fabulous folks working on fungal and oomycete genetics. Its super humbling and inspiring to attend such international meetings, especially when you see great scientists still talking about their research like they had just begun! The workshops on FungiDB. I got some good ideas during the poster session from some senior PIs about how i could improve my work on the P450s. And the Calcium signaling database. The Fungal Genetic...

futureomics.com

All Categories - Futureomics

http://www.futureomics.com/blog/category/all

Resources for fungal genomics. So i decided to create one myself here: http:/ www.futureomics.com/resources.html. Please feel free to add and recommend any tools and resources i may have missed. Back from FGC 2013. Came back on Sunday from the FGC 2013. Learnt a lot from some fabulous folks working on fungal and oomycete genetics. Its super humbling and inspiring to attend such international meetings, especially when you see great scientists still talking about their research like they had just begun!

futureomics.com

Back from FGC 2013 - Futureomics

http://www.futureomics.com/blog/back-from-fgc-2013

Back from FGC 2013. Came back on Sunday from the FGC 2013. Learnt a lot from some fabulous folks working on fungal and oomycete genetics. Its super humbling and inspiring to attend such international meetings, especially when you see great scientists still talking about their research like they had just begun! The workshops on FungiDB. I got some good ideas during the poster session from some senior PIs about how i could improve my work on the P450s. And the Calcium signaling database.

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Laboratory Strains and Lineage. Welcome to the Aspergillus 21-way comparative database asp2 v9 powered by Sybil. This website is built on top of a Chado. Comparative database and provides a number of tools for analyzing and visualizing the data. Sybil relies on precomputed searches- primarily BLASTP searches and protein clustering analyses- the results of which are stored in the comparative database and queried as needed. Here is a summary of where you can go from this page and how to move around Sybil:.

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Aspergillus Genome Database

Laboratory Strains and Lineage. AspGD is an organized collection of genetic and molecular biological information about the filamentous fungi of the genus Aspergillus. Among its many species, the genus contains an excellent model organism ( A. nidulans. Or its teleomorph Emericella nidulans. An important pathogen of the immunocompromised ( A. fumigatus. An agriculturally important toxin producer ( A. flavus. And two species used in industrial processes ( A. niger. Upcoming Meetings and Courses. PYFF6 - 6t...

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