ASSOCIATIONVIEWER.VITAL-IT.CH

AssociationViewer homepage

Swiss Institute of Bioinformatics. Welcome to the AssociationViewer homepage. AssociationViewer is a Java application used to display SNPs in a genetic context. Supplementary data (such as genes or LD plots) is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks. It is being developed at the Swiss Institute of Bioinformatics. If you use AssociationViewer in your work, please cite this publication:.

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AssociationViewer homepage | associationviewer.vital-it.ch Reviews

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Swiss Institute of Bioinformatics. Welcome to the AssociationViewer homepage. AssociationViewer is a Java application used to display SNPs in a genetic context. Supplementary data (such as genes or LD plots) is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks. It is being developed at the Swiss Institute of Bioinformatics. If you use AssociationViewer in your work, please cite this publication:.

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8 tips and tricks

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AssociationViewer homepage | associationviewer.vital-it.ch Reviews

https://associationviewer.vital-it.ch

Swiss Institute of Bioinformatics. Welcome to the AssociationViewer homepage. AssociationViewer is a Java application used to display SNPs in a genetic context. Supplementary data (such as genes or LD plots) is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks. It is being developed at the Swiss Institute of Bioinformatics. If you use AssociationViewer in your work, please cite this publication:.

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associationviewer.vital-it.ch

1

AssociationViewer homepage

http://associationviewer.vital-it.ch/requirements.php

Swiss Institute of Bioinformatics. Welcome to the AssociationViewer homepage. Java plugin version 1.6 (aka Java6) or more recent, which is usually already installed on most computers and OS (Operating System). If it is not the case, it can be downloaded from the Java official web site. This is the JRE link, not the JDK). A reasonable screen resolution (minimum 1024 x 768, more is recommended). A working Internet connection. Enough free memory, AssociationViewer uses by default 256 MB of memory.

2

AssociationViewer homepage

http://associationviewer.vital-it.ch/index.php

Swiss Institute of Bioinformatics. Welcome to the AssociationViewer homepage. AssociationViewer is a Java application used to display SNPs in a genetic context. Supplementary data (such as genes or LD plots) is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks. It is being developed at the Swiss Institute of Bioinformatics. If you use AssociationViewer in your work, please cite this publication:.

3

AssociationViewer homepage

http://associationviewer.vital-it.ch/download.php

Swiss Institute of Bioinformatics. Welcome to the AssociationViewer homepage. Please select the amount of memory which will be used by the application. Clicking on a Start button will open a dialog box. If the Java plugin is installed (see the requirements page. For details), the file can be opened with either javaws. Or Java Web Start. Application (depending on your OS). Several example data files used by AssociationViewer can be downloaded from the download section. Swiss Institute of Bioinformatics.

4

AssociationViewer homepage

http://associationviewer.vital-it.ch/news.php

Swiss Institute of Bioinformatics. Welcome to the AssociationViewer homepage. Note: if you don't have the latest version (menu Help- About) when using the Java Web Start link, try to empty the cache of your browser. 20082010: version 2.0 is online. BED track stacked mode was incorrectly displayed. BED track display was out of range. Zoom when double-clicking was disabled. Support for Mouse is now built-in. Support for command-line arguments (internal use only). Gzip files are supported (but not zip).

5

AssociationViewer homepage

http://associationviewer.vital-it.ch/tips.php

Swiss Institute of Bioinformatics. Welcome to the AssociationViewer homepage. Single-clicking on a track will display details about either the SNPs or the genes at this position in the left panel. Double-clicking on a track will zoom in at this position. Regular keyboard shortcuts can be used where tables are used to display data. In the following list, replace META with the appropriate key on your OS (i.e.: CTRL for Windows or Linux). META-A select all the elements. The main window can be resized.

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ExPASy: SIB Bioinformatics Resource Portal - Categories

http://www.expasy.org/genomics

Query within a category:. Query a specific database:. Protein sequences and identification. Sequence sites, features and motifs. No support from the ExPASy Team). Bull; collection of eukaryotic promoters • [more]. Bull; Hierarchical catalog of eukaryotic orthologs • [more]. Bull; annotations of regulatory sites • [more]. Bull; SwissRegulon is a database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intu...Bull;...

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AssociationViewer homepage

Swiss Institute of Bioinformatics. Welcome to the AssociationViewer homepage. AssociationViewer is a Java application used to display SNPs in a genetic context. Supplementary data (such as genes or LD plots) is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks. It is being developed at the Swiss Institute of Bioinformatics. If you use AssociationViewer in your work, please cite this publication:.

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