ATLAS.BX.PSU.EDU

Genome Cartography — Genome Cartography v1.0.0 documentation

Enter search terms or a module, class or function name. The Penn State Genome Cartography Project. Is a collaboration between Penn State's Center for Eukaryotic Gene Regulation. And Center for Comparative Genomics and Bioinformatics. To map DNA sequence features, protein-nucleic acid interactions, and other information to the genomes of model organisms, and present that information in a visually cognitive way that provides a discovery pathway for biological knowledge. Maps of the Saccharomyces.

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Genome Cartography — Genome Cartography v1.0.0 documentation | atlas.bx.psu.edu Reviews

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Enter search terms or a module, class or function name. The Penn State Genome Cartography Project. Is a collaboration between Penn State's Center for Eukaryotic Gene Regulation. And Center for Comparative Genomics and Bioinformatics. To map DNA sequence features, protein-nucleic acid interactions, and other information to the genomes of model organisms, and present that information in a visually cognitive way that provides a discovery pathway for biological knowledge. Maps of the Saccharomyces.

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6 quick search

7 current projects

8 genome

9 people

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Genome Cartography — Genome Cartography v1.0.0 documentation | atlas.bx.psu.edu Reviews

https://atlas.bx.psu.edu

Enter search terms or a module, class or function name. The Penn State Genome Cartography Project. Is a collaboration between Penn State's Center for Eukaryotic Gene Regulation. And Center for Comparative Genomics and Bioinformatics. To map DNA sequence features, protein-nucleic acid interactions, and other information to the genomes of model organisms, and present that information in a visually cognitive way that provides a discovery pathway for biological knowledge. Maps of the Saccharomyces.

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Genome Cartography — Genome Cartography v1.0.0 documentation

Enter search terms or a module, class or function name. The Penn State Genome Cartography Project. Is a collaboration between Penn State's Center for Eukaryotic Gene Regulation. And Center for Comparative Genomics and Bioinformatics. To map DNA sequence features, protein-nucleic acid interactions, and other information to the genomes of model organisms, and present that information in a visually cognitive way that provides a discovery pathway for biological knowledge. Maps of the Saccharomyces.

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atlas.bx.psu.edu

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Contents — Genome Cartography v1.0.0 documentation

http://atlas.bx.psu.edu/contents.html

Enter search terms or a module, class or function name. Nucleosome Maps of the Drosophila Genome. Aligning multiplexed paired-end samples. High performance computing guide. Using the SOLiD Pipeline. Step 1. Barcode Split. Step 2. Size Split. Step 3. Mapping to reference. Step 4. Formatting the output.

2

Index — Genome Cartography v1.0.0 documentation

http://atlas.bx.psu.edu/genindex.html

Enter search terms or a module, class or function name.

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Genomic organization of human transcription initiation complexes

http://atlas.bx.psu.edu/project/human.html

Enter search terms or a module, class or function name. Genomic organization of human transcription initiation complexes. Genomic organization of human transcription initiation complexes. Bryan J. Venters, and B. Franklin Pugh. Nature 2013 Sep 18. doi: 10.1038/nature12535. Download the sequencing data. Frank Pugh and Bryan Venters.

4

Nucleosome Maps of the Drosophila Genome — Genome Cartography v1.0.0 documentation

http://atlas.bx.psu.edu/project/drosophila.html

Enter search terms or a module, class or function name. Nucleosome Maps of the Drosophila Genome. Nucleosome organization in the Drosophila genome. Travis N. Mavrich, Cizhong Jiang, Ilya P. Ioshikhes, Xiaoyong Li, Bryan J. Venters, Sara J. Zanton, Lynn P. Tomsho, Ji Qi, Robert Glaser, Stephan C. Schuster, David S. Gilmour, Istvan Albert, and B. Franklin Pugh. Nature 453, 358-362 (15 May 2008). Download the sequencing data. More information about GeneTrack.

5

Resources — Genome Cartography v1.0.0 documentation

http://atlas.bx.psu.edu/resources/resource-index.html

Nucleosome Maps of the Drosophila Genome. Enter search terms or a module, class or function name. Some of the pages below require authorization. Aligning multiplexed paired-end samples. High performance computing guide.

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generegulation.info

Nucleosome positioning datasets

http://www.generegulation.info/index.php/nucleosome-positioning/high-throughput-data

Quantitative descriptions of gene regulation. Science 2.0 links. Journals free for authors. Below is a manually curated collection of experimental nucleosome positioning datasets. This list is being constantly updated, comments are very welcome. Related lists: MNase-seq analysis software. Teif V.B. (2015). Nucleosome positioning: resources and tools online. DOI: 10.1093/bib/bbv086 Advance Access Online. Nucleosome positioning datasets sorted by cell type, newest first:. Nucleosome positioning and DNA met...

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Genome Cartography — Genome Cartography v1.0.0 documentation

Enter search terms or a module, class or function name. The Penn State Genome Cartography Project. Is a collaboration between Penn State's Center for Eukaryotic Gene Regulation. And Center for Comparative Genomics and Bioinformatics. To map DNA sequence features, protein-nucleic acid interactions, and other information to the genomes of model organisms, and present that information in a visually cognitive way that provides a discovery pathway for biological knowledge. Maps of the Saccharomyces.

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