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atparwith.blogspot.com
At par with me
At par with me. Wednesday, February 15, 2017. Gene expression profile outlier analysis. 1) Packages that makes parametric assumption - mostly for microarray gene expression data. MOST, ZOPET, OPPAR, mCOPA, PPST, OS, ORT. CoGPS From the first glance look very useful. 1 - non parametric. 2 - allows integration of multiple data types like expression, methylation and copy number. 3 - permutation based p-value (based on D. Ghosh's work). 4 - Both gene and patience wise outlier detection. A general requirement...
