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atpbsmd.yokohama-cu.ac.jp

AtGenExpress JPN

Is a multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana. This large collaborative project will combine resources of gene expression patterns using Affymetrix GeneChip across the whole plant-life cycle. To find biological relationships among experiments available in public databases, correlations of transcriptome experiments were analyzed by module-based correlation approach, and then presented in networks. Data table of AtGenExpress Japan.

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AtGenExpress JPN | atpbsmd.yokohama-cu.ac.jp Reviews
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Is a multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana. This large collaborative project will combine resources of gene expression patterns using Affymetrix GeneChip across the whole plant-life cycle. To find biological relationships among experiments available in public databases, correlations of transcriptome experiments were analyzed by module-based correlation approach, and then presented in networks. Data table of AtGenExpress Japan.
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AtGenExpress JPN | atpbsmd.yokohama-cu.ac.jp Reviews

https://atpbsmd.yokohama-cu.ac.jp

Is a multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana. This large collaborative project will combine resources of gene expression patterns using Affymetrix GeneChip across the whole plant-life cycle. To find biological relationships among experiments available in public databases, correlations of transcriptome experiments were analyzed by module-based correlation approach, and then presented in networks. Data table of AtGenExpress Japan.

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atpbsmd.yokohama-cu.ac.jp atpbsmd.yokohama-cu.ac.jp
1

AtGenExpress

http://atpbsmd.yokohama-cu.ac.jp/AtGenExpressJPN/contributors.html

AtGenExpress is supported by RIKEN Plant Sicence Center (PSC). Dr Hideki Goda (PSC Lab for growth regulation). Dr Yukihisa Shimada (PSC Lab for growth regulation). Dr Shigeo Yoshida (PSC Lab for growth regulation). Dr Shozo Fujioka (PSC Lab for growth regulation). Dr Tadao Asami (Plant functions lab.). Dr Suguru Takatsuto (Joetsu University of Education). Dr Hitoshi Sakakibara (PSC Lab. for communication mechanism). Dr Koh Aoki (PSC Lab. for communication mechanism). Dr Takatoshi Kiba (Nagoya University).

2

AtGenExpress

http://atpbsmd.yokohama-cu.ac.jp/AtGenExpressJPN/links.html

AtGenExpress (link to AFGN). AtGenExpress (link to TAIR). RIKEN GSC(Genome Science Center) Plant Group (RARGE). PSC-RIKEN Database of EST/Gene expression (PRIDE). The Arabidopsis Functional Genomis Network (AFGN). The Arabidopsis Infromation Resource (TAIR). RIKEN PSC(Plant Science Center). This site is managed Y.Shimada. ESasaki and C.Takahashi at.

3

AtGenExpress

http://atpbsmd.yokohama-cu.ac.jp/AtGenExpressJPN/AtGenExpress.html

Data Table of AtGenExpress JAPAN. Table1 hormone and inhibitor treatments. Basic hormone treatment of seedlings. Seedlings (genotypes Col-0, ga1-5. Were grown in MS-liquid medium for 7 days at 23 ˚C and treated with IAA, zeatin, GA3, ABA, MJ, ACC, or BL for 30 min, 1 hour, or 3 hours. Brassinosteroids treatment of seedlings. Cytokinin treatment of seedlings. Seedlings (genotypes Col-0, ARR22-ox. Were grown on MS-agar plates for 21 days at 22 ˚C and were treated with t-zeatin for 3 hours. Seedlings (genot...

4

AtGenExpress JPN

http://atpbsmd.yokohama-cu.ac.jp/AtGenExpressJPN

Is a multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana. This large collaborative project will combine resources of gene expression patterns using Affymetrix GeneChip across the whole plant-life cycle. Redman, JC, Haas BJ, Tanimoto G, Town CD. 2004) Development and evaluation of an Arabidopsis whole genome Affymetrix probe array. Plant Journal 38: 545-561. The official data release Web site. AtGenExpress data downloader (Japanese only).

5

AtGenExpress

http://atpbsmd.yokohama-cu.ac.jp/AtGenExpressJPN/datacont.html

Please consult about details of the values in the data with data analysis fundamentals manual in the Affymetix's web site. Goda's data (part 1). Early responses to seven phytohormones (IAA, ABA, ACC, brassinolide, GA3, MeJA, zeatin). Wild-type seedlings were treated with phytohormones for 30 min, 1 h or 3h. Det2 or ga1-5 seedlings were treated by brassinolide or GA3 for 30 min, 1 h or 3h. Response of WT and transgenic (overexpressors of ARR21 or 22) seedlings to zeatin. Goda's data (part 2).

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pbiotech.sci.yokohama-cu.ac.jp pbiotech.sci.yokohama-cu.ac.jp

LINK | 公立大学法人 横浜市立大学 木原生物学研究所 植物応用ゲノム科学部門

http://pbiotech.sci.yokohama-cu.ac.jp/smd/index.php/link

公立大学法人 横浜市立大学 木原生物学研究所 植物応用ゲノム科学部門.

psc.riken.go.jp psc.riken.go.jp

データベース | 独立行政法人 理化学研究所 植物科学研究センター

http://www.psc.riken.go.jp/database/index.html

RIKEN Arbidopsis Genome Encyclopedia (RARGE). Platform for RIKEN Metabolomics (PRIMe). Transcripotme Analysis of BY-2 (TAB). PSC-RIKEN Database of EST/Gene Expression (PRIDE). TriMEDB:Triticeae Mapped EST DataBase. RIPP-DB(RIKEN Plant Phosphoproteome Database). Phenome Analysis of Ds transposon-tagging line in Arabidopsis (RAPID). Arabidopsis Gene Expression profile DataBase (AtGenExpress. RIKEN Activation Tagging Line Database. TriFLDB: Triticeae Full-Length CDS DataBase.

psc.riken.jp psc.riken.jp

データベース | 独立行政法人 理化学研究所 植物科学研究センター

http://www.psc.riken.jp/database/index.html

RIKEN Arbidopsis Genome Encyclopedia (RARGE). Platform for RIKEN Metabolomics (PRIMe). Transcripotme Analysis of BY-2 (TAB). PSC-RIKEN Database of EST/Gene Expression (PRIDE). TriMEDB:Triticeae Mapped EST DataBase. RIPP-DB(RIKEN Plant Phosphoproteome Database). Phenome Analysis of Ds transposon-tagging line in Arabidopsis (RAPID). Arabidopsis Gene Expression profile DataBase (AtGenExpress. RIKEN Activation Tagging Line Database. TriFLDB: Triticeae Full-Length CDS DataBase.

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AtGenExpress JPN

Is a multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana. This large collaborative project will combine resources of gene expression patterns using Affymetrix GeneChip across the whole plant-life cycle. To find biological relationships among experiments available in public databases, correlations of transcriptome experiments were analyzed by module-based correlation approach, and then presented in networks. Data table of AtGenExpress Japan.

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