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AURA - Atlas of UTR Regulatory Activity

Filter trans-factors and targets by genes expressed in:. Any tissue - cell type. Brain - Anterior cingulate cortex BA24. Brain - Caudate basal ganglia. Brain - Cerebellar Hemisphere. Brain - Frontal Cortex BA9. Brain - Nucleus accumbens basal ganglia. Brain - Putamen basal ganglia. Brain - Spinal cord cervical c 1. Brain - Substantia nigra. Breast - Mammary Tissue. Cells - EBV transformed lymphocytes. Cells - Transformed fibroblasts. Heart - Atrial Appendage. Heart - Left Ventricle. Vessel Artery - Aorta.

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AURA - Atlas of UTR Regulatory Activity | aura.science.unitn.it Reviews

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Filter trans-factors and targets by genes expressed in:. Any tissue - cell type. Brain - Anterior cingulate cortex BA24. Brain - Caudate basal ganglia. Brain - Cerebellar Hemisphere. Brain - Frontal Cortex BA9. Brain - Nucleus accumbens basal ganglia. Brain - Putamen basal ganglia. Brain - Spinal cord cervical c 1. Brain - Substantia nigra. Breast - Mammary Tissue. Cells - EBV transformed lymphocytes. Cells - Transformed fibroblasts. Heart - Atrial Appendage. Heart - Left Ventricle. Vessel Artery - Aorta.

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AURA - Atlas of UTR Regulatory Activity | aura.science.unitn.it Reviews

https://aura.science.unitn.it

Filter trans-factors and targets by genes expressed in:. Any tissue - cell type. Brain - Anterior cingulate cortex BA24. Brain - Caudate basal ganglia. Brain - Cerebellar Hemisphere. Brain - Frontal Cortex BA9. Brain - Nucleus accumbens basal ganglia. Brain - Putamen basal ganglia. Brain - Spinal cord cervical c 1. Brain - Substantia nigra. Breast - Mammary Tissue. Cells - EBV transformed lymphocytes. Cells - Transformed fibroblasts. Heart - Atrial Appendage. Heart - Left Ventricle. Vessel Artery - Aorta.

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AURA - Atlas of UTR Regulatory Activity

http://aura.science.unitn.it/cite

How to cite AURA. Please cite AURA in your publications as follows:. Dassi E, Re A, Leo S, Tebaldi T, Pasini L, Peroni D and Quattrone A. (2014). AURA 2: Empowering discovery of post-transcriptional networks. The paper is open access and can be downloaded here. AREsite: a database for the comprehensive investigation of AU-rich elements. A compendium of RNA-binding motifs for decoding gene regulation. COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer.

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AURA - Atlas of UTR Regulatory Activity

http://aura.science.unitn.it/download

Basic annotations, variations, half-life, uncoupling, trans-factors and cis-elements data are contained, along with the table structure, in the MySQL database dump which you can download below. AURA mysql dump.sql.gz. A reduced form of the database, called AURAlight and including only regulatory sites for trans-factors and cis-elements on UTRs, with position, factor and UTR identity can be downloaded below. Here you can download several files containing annotation that can be used right away with DynaMIT.

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AURA - Atlas of UTR Regulatory Activity

http://aura.science.unitn.it/about

The Atlas of UTR Regulatory Activity. AURA) is a manually curated and comprehensive catalog of human UTRs and UTR regulatory annotations. Through its intuitive web interface, it provides full access to a wealth of information that integrates RNA sequence and structure. Data, regulatory and variation sites, gene synteny, gene and protein expression and gene functional descriptions from scientific literature and specialized databases, all exploitable through its various data mining tools.

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