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Automatic Extension of Gene Ontology with Flexible Identification of Candidate Terms. We present a novel method that predicts more detailed concepts by utilizing syntactic relations among the existing concepts. We propose a validation measure for the automatically predicted concepts by matching the concepts to biomedical articles. We also suggest how to find a suitable direction for the extension of a constantly-growing ontology such as GO. Extended GO from the version of June 2004. Jin-Bok Lee, Jung-jae...

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Automatic Extension of Gene Ontology with Flexible Identification of Candidate Terms. We present a novel method that predicts more detailed concepts by utilizing syntactic relations among the existing concepts. We propose a validation measure for the automatically predicted concepts by matching the concepts to biomedical articles. We also suggest how to find a suitable direction for the extension of a constantly-growing ontology such as GO. Extended GO from the version of June 2004. Jin-Bok Lee, Jung-jae...

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5 gene ontology go

6 results

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8 extension of go

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https://autogo.biopathway.org

Automatic Extension of Gene Ontology with Flexible Identification of Candidate Terms. We present a novel method that predicts more detailed concepts by utilizing syntactic relations among the existing concepts. We propose a validation measure for the automatically predicted concepts by matching the concepts to biomedical articles. We also suggest how to find a suitable direction for the extension of a constantly-growing ontology such as GO. Extended GO from the version of June 2004. Jin-Bok Lee, Jung-jae...

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autogo.biopathway.org

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Evaluation: for terms in GO (already validated terms)

http://autogo.biopathway.org/Validation/goterm_vo.html

Evaluation: for terms in GO (already validated terms). 2] cell wall biosynthesis (sensu Gram-negative Bacteria ). 3] clypeo-labral disc development. 4] determination of genital disc primordium. 5] determination of wing disc primordium. 6] endothelial cell development. 7] eye-antennal disc development. 8] genital disc anterior/posterior pattern formation. 9] genital disc development. 10] genital disc pattern formation. 11] hair cell differentiation. 12] haltere disc development. 13] labial disc development.

2

Evaluation: for terms not in GO (not yet validated terms)

http://autogo.biopathway.org/Validation/goterm_vx.html

Evaluation: for terms not in GO (not yet validated terms). 1] cell expansion and/or maintenance. 2] cell wall biosynthesis (sensu Gram-positive Bacteria ). 3] clypeo-labral disc eversion. 4] determination of haltere disc primordium. 5] di- , tri-valent inorganic diphosphate homeostasis. 6] endothelial cell fate commitment. 7] eye-antennal disc eversion. 8] genital disc eversion. 9] genital disc proximal/distal pattern formation. 10] hair cell division. 11] haltere disc eversion. 12] labial disc eversion.

3

Extended GO from the version of 20040601

http://autogo.biopathway.org/Extension/extendedGO_20040601.html

Extended GO from the version of 20040601. Behavioral response to pain. Behavioral response to water deprivation. Regulation of cellular process. Regulation of gene expression , epigenetic. 2 ,4 ,5-trichlorophenoxyacetic acid biosynthesis. 2 ,4 ,6-trinitrotoluene biosynthesis. 2 ,4-dichlorobenzoate biosynthesis. 2 ,4-dichlorophenoxyacetic acid biosynthesis. 3'-splice site cleavage , exon ligation. Activation of MAPK (mating sensu Fungi). Activation of MAPK (mating sensu Saccharomyces). Age dependent accum...

4

Baseline Evaluation: for terms in GO (already validated terms)

http://autogo.biopathway.org/Validation/baseline_sentence_vo.html

Baseline Evaluation: for terms in GO (already validated terms). Some LSCs emerged only in recipients of serial transplantation, indicating they divided rarely and underwent self-renewal rather than commitment after cell division. Replicative senescence is induced by critical telomere shortening and limits the proliferation of primary cells to a finite number of divisions. 2] cell wall biosynthesis (sensu Gram-negative Bacteria ). 3] clypeo-labral disc development. 5] determination of wing disc primordium.

5

Baseline Evaluation: for terms not in GO (not yet validated terms)

http://autogo.biopathway.org/Validation/baseline_sentence_vx.html

Baseline Evaluation: for terms not in GO (not yet validated terms). 1] cell expansion and/or maintenance. These results suggest that culture on FN support allows prolonged ex vivo maintenance and even expansion of transduced repopulating stem cells. 2] cell wall biosynthesis (sensu Gram-positive Bacteria ). 3] clypeo-labral disc eversion. 4] determination of haltere disc primordium. 5] di- , tri-valent inorganic diphosphate homeostasis. 6] endothelial cell fate commitment. 7] eye-antennal disc eversion.

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bioinformatics.oxfordjournals.org

Automatic extension of Gene Ontology with flexible identification of candidate terms

http://bioinformatics.oxfordjournals.org/cgi/content/abstract/22/6/665

View Current Issue (Volume 32 Issue 16 August 15, 2016). Automatic extension of Gene Ontology with flexible identification of candidate terms. We present a novel method that predicts more detailed concepts by utilizing syntactic relations among the existing concepts. We propose a validation measure for the automatically predicted concepts by matching the concepts to biomedical articles. We also suggest how to find a suitable direction for the extension of a constantly growing ontology such as GO. Search ...

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Automatic Extension of Gene Ontology with Flexible Identification of Candidate Terms. We present a novel method that predicts more detailed concepts by utilizing syntactic relations among the existing concepts. We propose a validation measure for the automatically predicted concepts by matching the concepts to biomedical articles. We also suggest how to find a suitable direction for the extension of a constantly-growing ontology such as GO. Extended GO from the version of June 2004. Jin-Bok Lee, Jung-jae...

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