autosnpdb.appliedbioinformatics.com.au

autoSNPdb :: ACPFG Bioinformatics Group

I) Search the database using keyword(s). Search in the contigs (aligned sequences) and singletons for SNPs. Search for words in the UniRef or Gene Ontology annotation. Or simply enter a Contig ID or a Sequence Accession. Ii) Search for SNPs between cultivars. Please wait while it loads cultivars). Select two cultivars to find all of the SNPs that correlate with them. Iii) Search for SNPs homologous to reference genomic locations. That match sequence within that region. At any time for full system help, or.

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autoSNPdb :: ACPFG Bioinformatics Group | autosnpdb.appliedbioinformatics.com.au Reviews

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I) Search the database using keyword(s). Search in the contigs (aligned sequences) and singletons for SNPs. Search for words in the UniRef or Gene Ontology annotation. Or simply enter a Contig ID or a Sequence Accession. Ii) Search for SNPs between cultivars. Please wait while it loads cultivars). Select two cultivars to find all of the SNPs that correlate with them. Iii) Search for SNPs homologous to reference genomic locations. That match sequence within that region. At any time for full system help, or.

<META> KEYWORDS

1 autosnpdb

2 1 select species

3 barley

4 brassica

5 rice

6 wheat

7 2 select action

8 v database statistics

9 click

10 acknowledgements and disclaimer

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autosnpdb,1 select species,barley,brassica,rice,wheat,2 select action,v database statistics,click,acknowledgements and disclaimer

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autoSNPdb :: ACPFG Bioinformatics Group | autosnpdb.appliedbioinformatics.com.au Reviews

https://autosnpdb.appliedbioinformatics.com.au

I) Search the database using keyword(s). Search in the contigs (aligned sequences) and singletons for SNPs. Search for words in the UniRef or Gene Ontology annotation. Or simply enter a Contig ID or a Sequence Accession. Ii) Search for SNPs between cultivars. Please wait while it loads cultivars). Select two cultivars to find all of the SNPs that correlate with them. Iii) Search for SNPs homologous to reference genomic locations. That match sequence within that region. At any time for full system help, or.

INTERNAL PAGES

autosnpdb.appliedbioinformatics.com.au

1

autoSNPdb Help Pages

http://autosnpdb.appliedbioinformatics.com.au/help.htm

This is a guide for using autoSNPdb. If you can't find what you need here then please look up our FAQ. Click on a link below to view help for that topic. The species name that was selected on the first screen appears at the top of this search box. Descriptions - With SNPs or Descriptions - All. Searches for any words that you enter in the annotation descriptions of contigs or singletons. With SNPs just returns those contigs/singletons that have 1 or more SNPs. When a contig is listed it is shown as.

2

autoSNPdb :: ACPFG Bioinformatics Group

http://autosnpdb.appliedbioinformatics.com.au/index.jsp?species=

I) Search the database using keyword(s). Search in the contigs (aligned sequences) and singletons for SNPs. Search for words in the UniRef or Gene Ontology annotation. Or simply enter a Contig ID or a Sequence Accession. Ii) Search for SNPs between cultivars. Please wait while it loads cultivars). Select two cultivars to find all of the SNPs that correlate with them. Iii) Search for SNPs homologous to reference genomic locations. That match sequence within that region. At any time for full system help, or.

3

Acknowledgements, Requirements and Disclaimer

http://autosnpdb.appliedbioinformatics.com.au/ackDis.html

Acknowledgements, Requirements and Disclaimer. ARC Centre of Excellence for Integrative Legume Research (CILR). Queensland Facility for Advanced Bioinformatics (QFAB). Support from The Australian Partnership for Advanced Computing (APAC) is gratefully acknowledged. 1 To ensure complete functionality, users must have their browser enabled with JavaScript. 2 The site has been tested to function in Mozilla Firefox 2.0. Some functionality may be lost if using Internet Explorer. To from this site. There is no...

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k1ai.com

Projects - Kaitao Lai

http://k1ai.com/projects.html

My PhD projects are related with genetic variations. Genetic variation across 16 Australian bread wheat varieties. SNP density analysis provides insights into the evolution and breeding history of this important crop. Furthermore, this SNP resource permits the application of high resolution skim based genotyping by sequencing, trait association and analysis of structural variation in populations. All SNPs are publically available on a GBrowse genome viewer at. More details can be found.

brassicagenome.net

details :: Brassica Genome

http://www.brassicagenome.net/details.php

Species represent important crops providing a major source of cooking oil, vegetables and condiments across many countries. The species relationship of cultivated Brassicas was described by the triangle of U with the three amphidiploid Brassica. Species B. juncea. AABB, 2n=36), B. napus. AACC, 2n=38) and B. carinata. BBCC, 2n=34) formed through interspecific hybridization between the diploid Brassica. Species, B. rapa. AA, 2n=20), B. nigra. BB, 2n=16) and B. oleracea. The first public Brassica. Including...

batleylab.net

SNP discovery - Batley Lab

http://www.batleylab.net/index.php/Special:Random

Where sequence trace files are available for comparison to filter out polymorphisms in traces of dubious quality, software such as PolyBayes and Polyphred are the most efficient means to differentiate between true SNPs and sequence error. In cases where trace files are unavailable, the identification of sequence errors can be based on two further methods to determine SNP confidence; redundancy of the polymorphism in an alignment, and co-segregation of SNPs with haplotype. Savage D, Batley J, Erwin T, Log...

appliedbioinformatics.com.au

SNP discovery - Applied Bioinformatics Group

http://appliedbioinformatics.com.au/index.php/SNP_discovery

From Applied Bioinformatics Group. The implementation of autoSNPdb allows researchers to query the re-sults of SNP analysis to characterise SNPs between specific groups of individuals or within genes with predicted function. The system is flexible and researchers may add additional levels of annotation, and perform novel queries specific to their area of interest. Lai K, Lorenc MT and Edwards D. (2012) Genomic databases for crop improvement. Agronomy 2: 67-73. Azam S, Thakur V, Pradeep R, Shah T, Jayashr...

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autosnpdb.appliedbioinformatics.com.au

autoSNPdb :: ACPFG Bioinformatics Group

I) Search the database using keyword(s). Search in the contigs (aligned sequences) and singletons for SNPs. Search for words in the UniRef or Gene Ontology annotation. Or simply enter a Contig ID or a Sequence Accession. Ii) Search for SNPs between cultivars. Please wait while it loads cultivars). Select two cultivars to find all of the SNPs that correlate with them. Iii) Search for SNPs homologous to reference genomic locations. That match sequence within that region. At any time for full system help, or.

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