Metadata APIs for Django. Fields vs. Concepts. Persisting Sets of Objects. Avocado was designed to alleviate the opaqueness of complex data models and large data sets. Each come with their own set of challenges.
http://avocado.harvest.io/
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Avocado: Metadata APIs for Django | avocado.harvest.io Reviews
https://avocado.harvest.io
Metadata APIs for Django. Fields vs. Concepts. Persisting Sets of Objects. Avocado was designed to alleviate the opaqueness of complex data models and large data sets. Each come with their own set of challenges.
avocado.harvest.io
Lexicons
http://avocado.harvest.io/ref/lexicons.html
Metadata APIs for Django. Fields vs. Concepts. Persisting Sets of Objects. Avocado defines an abstract class named. It is a common practice when normalizing a data model to. Repeated finite sets of terms within a column into their own table. This is quite obvious for entities such as. But less so for commonly used or enumerable terms. Id name birth month - - - - - - - - - - - 1 Sue May 2 Joe Jun 3 Bo Jan 4 Jane Apr . The above shows a table with three columns. There are some inherent issues with. In addi...
Managing Your Metadata
http://avocado.harvest.io/guide/managing-your-metadata.html
Metadata APIs for Django. Fields vs. Concepts. Persisting Sets of Objects. One of the challenges of data model derived metadata is keeping it up-to-date when schema changes occur. Conveniently, there is library called South. For Django which provides an API for creating schema and data migration scripts. If you arent using this for your models, you should be. In fact, as of version 2.0.7, Avocado requires it as a hard dependency. New in Avocado 2.0.15. The migration command acts as an. This is required s...
License
http://avocado.harvest.io/dev/license.html
Metadata APIs for Django. Fields vs. Concepts. Persisting Sets of Objects.
Settings
http://avocado.harvest.io/doc/settings.html
Metadata APIs for Django. Fields vs. Concepts. Persisting Sets of Objects. Avocado settings are defined as a dictionary, named. With each key corresponding to a setting listed below:. When this flag is set to. Those methods decorated with. Will have their results cached indefinitely. When. The methods are called normally and the results never cached. This setting defaults to. Datatypes from Avocados perspective are used purely as metadata for the purposes of making the underlying data accessible. A gener...
Query Processing Pipeline
http://avocado.harvest.io/doc/query-processors.html
Metadata APIs for Django. Fields vs. Concepts. Persisting Sets of Objects. Since 2.0.24. Package for handling and combining some of the boilerplate setup and interaction between its APIs for using it as an end-to-end query pipeline. Currently there is a single class,. That provides a few methods to make it easier for constructing and executing queries. A processor is initialized with an optional set of arguments:. It also supports key lookups. Get queryset([queryset], [* kwargs]). Argument to act as a.
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Harvest | Articles
http://harvest.research.chop.edu/articles
At The Children's Hospital of Philadelphia Research Institute. We have a lot to talk about. We would, however, like to know what. In the community would like to learn more about. Let us know in the chatroom. Or send us an email at info@harvest.io. With your topics in mind. Thanks! Setting Up a Development Environment. Middot; December 10 2014. Navigate to the OpenMRS directory and switch to the demo branch. Adding an app to your Harvest instance. Middot; October 30 2014. Custom Controls in Cilantro.
Harvest | Resources
http://harvest.research.chop.edu/resources
At The Children's Hospital of Philadelphia Research Institute. Resources Videos, publications, press, and other resources. CHOP’s Harvest Toolkit Offers Innovative Data Discovery Resource for Biomedical Researchers. Harvest: an open platform for developing web-based biomedical data discovery and reporting applications. Journal of the American Medical Informatics Association (JAMIA). AudGenDB and Harvest - Origins of a Modern Web-Based Biomedical Data Discovery Stack. Longitudinal Pediatric Data Resource.
Harvest | Download
http://harvest.research.chop.edu/download
At The Children's Hospital of Philadelphia Research Institute. Download .and setup a new Harvest application. All releases and release notes are posted on the repos releases page on GitHub. Harvest requires Python 2.6 or 2.7 and Unix-based operating system (OS X, Linux, BSD). Most systems come with Python pre-installed or can be easily installed uses the operating systems package manager. For general download and install instructions, visit python.orgs download page. The output should look something like:.
Harvest | Setting Up a Development Environment
http://harvest.research.chop.edu/articles/2014/12/10/development-environment-setup
At The Children's Hospital of Philadelphia Research Institute. Setting Up a Development Environment. Middot; December 10 2014. This page provides instructions for setting up a local environment for developing and testing Avocado, Cilantro, and Serrano. To begin, checkout a local copy of the following repositories:. Navigate to the OpenMRS directory and switch to the demo branch with:. I suggest doing the following steps after setting up a virtual environment. Option to install in editable mode. At this p...
Harvest | Documentation
http://harvest.research.chop.edu/docs
At The Children's Hospital of Philadelphia Research Institute. We are in the process of organizing and updating the Harvest documentation as it has become fragmented across various sites. If you have any immediate questions, head over to the chatroom. To get help or email us directly at info@harvest.io. If you would like to contribute to this process, head over to the Harvest site issues. To see what needs to be done. Looking to start using Harvest on your own data? Check out the series of articles.
Harvest | Demos
http://harvest.research.chop.edu/demos
At The Children's Hospital of Philadelphia Research Institute. Explore a subset of the OpenMRS demo data with Harvest. Explore simulated data in the Observational Medical Outcomes Partnership (OMOP). Data model using Harvest. Please note this is not currently running on a production-grade server, so performance should be expected to be subpar. Brought to you by the fine folks in the Department of Biomedical and Health Informatics. At The Children's Hospital of Philadelphia Research Institute.
Harvest | Webinars
http://harvest.research.chop.edu/webinars
At The Children's Hospital of Philadelphia Research Institute. How CHOP Created A Last Mile Solution for Clinical Research Data. Aired November 1, 2013 · YouTube Playlist. 1 Intro To Harvest. 4 Who Is Using Harvest. 5 Philosophy And Future Direction. Brought to you by the fine folks in the Department of Biomedical and Health Informatics. At The Children's Hospital of Philadelphia Research Institute. Join the discussion on the Harvest Google Group. For updates on bug fixes, new releases, and general news.
Harvest | About
http://harvest.research.chop.edu/about
At The Children's Hospital of Philadelphia Research Institute. Harvest is an open source framework for the rapid development of purpose-built data discovery web applications. Through our experience developing many data-intensive biomedical applications, our team at The Children’s Hospital of Philadelphia (CHOP) has been researching ways to lower the barriers for researchers and clinicians to explore their data. The result of our efforts is an open source framework called Harvest. Is Harvest For Me? With ...
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Avocado: Metadata APIs for Django
Metadata APIs for Django. Fields vs. Concepts. Persisting Sets of Objects. Avocado was designed to alleviate the opaqueness of complex data models and large data sets. Each come with their own set of challenges.
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