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Ensembl Bacteria

Ensembl Bacteria is a genome-centric portal for bacterial species of scientific interest

http://bacteria.ensembl.org/

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Ensembl Bacteria | bacteria.ensembl.org Reviews
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Ensembl Bacteria is a genome-centric portal for bacterial species of scientific interest
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Ensembl Bacteria | bacteria.ensembl.org Reviews

https://bacteria.ensembl.org

Ensembl Bacteria is a genome-centric portal for bacterial species of scientific interest

INTERNAL PAGES

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1

Ensembl Bacteria

http://bacteria.ensembl.org/info/about/species.html

Search for a gene. Search for a genome. Eg type esc to find Escherichia. Access to over 40,000. Search for a gene. Type the name of a gene or other identifier into the search box above. Click in the 'browse a genome' box above and start typing your genome name to find matching genomes. View full list of all Ensembl Bacteria species. Access Ensembl Bacteria programmatically. What's New in Release 32. To access Ensembl Genomes data from any programming language, try our REST service. New genomes, 15. Throu...

2

Ensembl Bacteria

http://bacteria.ensembl.org/info/website/help/index.html

Search for a gene. Search for a genome. Eg type esc to find Escherichia. Access to over 40,000. Search for a gene. Type the name of a gene or other identifier into the search box above. Click in the 'browse a genome' box above and start typing your genome name to find matching genomes. View full list of all Ensembl Bacteria species. Access Ensembl Bacteria programmatically. What's New in Release 32. To access Ensembl Genomes data from any programming language, try our REST service. New genomes, 15. Throu...

3

Escherichia coli str. K-12 substr. MG1655 - Ensembl Genomes

http://bacteria.ensembl.org/escherichia_coli_str_k_12_substr_mg1655

Search Escherichia coli str. K-12 substr. MG1655. Escherichia coli str. K-12 substr. MG1655 (ASM584v2). Escherichia coli str. K-12 substr. MG1655. Provider European Nucleotide Archive. Escherichia coli str. K-12 substr. MG1655. More information and statistics. Display your data in Ensembl Bacteria. What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs. More about this genebuild. Download genes, cDNAs, ncRNA, proteins - FASTA. What can I find?

4

Ensembl Bacteria

http://bacteria.ensembl.org/info/website/index.html

Track Hub Support in Ensembl. If you have a question that is not answered here, please Contact us. Looking for context-sensitive help? Button to get a pop-up help box containing a brief explanation of the page or image you're looking at. The following browsers are fully supported, i.e. all site features including JavaScript and CSS styles should work properly:. The following are not officially supported but should work with most or all of the site's current features:. Internet Explorer 6 and 7.

5

Ensembl Bacteria

http://bacteria.ensembl.org/tools.html

We provide a number of ready-made tools for processing both our data and yours. We routinely delete results from our servers after 10 days, but if you have an ensembl account. You will be able to save the results indefinitely. Analyse your own variants and predict the functional consequences of known and unknown variants via our Variant Effect Predictor (VEP) tool. Search our genomes for your DNA or protein sequence. Convert a set of Ensembl IDs from a previous release into their current equivalents.

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LINKS TO THIS WEBSITE

jul2016.archive.ensembl.org jul2016.archive.ensembl.org

Compare genes across species

http://jul2016.archive.ensembl.org/info/website/tutorials/compara.html

Compare genes across species. Variants for my gene. ENCODE data in Ensembl. The GRCh37 assembly in Ensembl. Use my own data. Compare genes across species. Compare genes across species. Gene Trees and Homologues. A representative protein for every gene in Ensembl across all species is used to determine gene trees. Homologues are separated into Orthologues. Across different species) and Paralogues. Gene Tree help page. Gene trees and homology. Compare species in the genomic alignment view.

plants.ensembl.org plants.ensembl.org

Oryza sativa Japonica Group - Ensembl Genomes

http://plants.ensembl.org/Oryza_sativa/Info/Index

Search Oryza sativa Japonica. Oryza sativa Japonica (IRGSP-1.0). Beta vulgaris subsp. vulgaris. Oryza sativa Japonica Group. Japonica (rice) is the staple food for 2.5 billion people. It is the grain with the second highest worldwide production after. In addition to its agronomic importance, rice is an important model species for monocot plants and cereals such as maize, wheat, barley and sorghum. More information and statistics. Genome assembly: IRGSP-1.0. More information and statistics. More about the...

plants.ensembl.org plants.ensembl.org

Ensembl Genomes: Oryza sativa Japonica Group - Custom tracks - Personal Data

http://plants.ensembl.org/UserData/ManageData?time=1439362367

Track Hub Registry Search. Configurations for this page. Your data p You can rename your uploads and attached URLs by clicking on their current name in the Source column /p p a href=/info/website/upload/index.html class=popup Help on supported formats, display types, etc /a /p. Search for public track hubs. Add a custom track. Name for this data (optional):. Beta vulgaris subsp. vulgaris. Oryza brachyantha.v1.4b. O longistaminata v1.0. Oryza meridionalis v1.3. Paste in data or provide a file URL.

plants.ensembl.org plants.ensembl.org

Ensembl Genomes: Oryza sativa Japonica Group - Login - Personal Data

http://plants.ensembl.org/Account/Favourites/Reset

Login to Ensembl Plants.

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Ensembl Genomes: Oryza sativa Japonica Group - BLAST search

http://plants.ensembl.org/Tools/Blast?db=core

Beta vulgaris subsp. vulgaris. Ensembl Plants is produced in collaboration with Gramene. Ensembl Plants release 32 - August 2016 EMBL-EBI. EMBL-EBI Terms of use.

fungi.ensembl.org fungi.ensembl.org

Ensembl Fungi

http://fungi.ensembl.org/info/website/help/index.html

Search for a gene. Search for a genome. Eg type sac to find Saccharomyces. For easy access to commonly used genomes, drag from the bottom list to the top one · Save. Aspergillus nidulans FGSC A4. Puccinia graminis f. sp. tritici CRL 75-36-700-3. Acidomyces richmondensis BFW (. Acremonium chrysogenum ATCC 11550 (. Acremonium chrysogenum ATCC 11550. Agaricus bisporus var. bisporus H97 (. Agaricus bisporus var. bisporus H97. Agaricus bisporus var. burnettii JB137-S8 (. Allomyces macrogynus ATCC 38327 (.

fungi.ensembl.org fungi.ensembl.org

Puccinia graminis f. sp. tritici CRL 75-36-700-3 - Ensembl Genomes

http://fungi.ensembl.org/Puccinia_graminis/Info/Index

Acremonium chrysogenum ATCC 11550. Agaricus bisporus var. bisporus H97. Agaricus bisporus var. burnettii JB137-S8. Allomyces macrogynus ATCC 38327. Amanita muscaria Koide BX008. Arthrobotrys oligospora ATCC 24927. Arthroderma benhamiae CBS 112371. Arthroderma otae CBS 113480. Aspergillus fumigatus var. RP-2014. Aspergillus nidulans FGSC A4. Aspergillus niger (GCA 001515345). Aspergillus niger ATCC 1015. Aspergillus nomius NRRL 13137. Aspergillus oryzae 3.042. Aspergillus ruber CBS 135680. Cladophialophor...

grch37.ensembl.org grch37.ensembl.org

Species List

http://grch37.ensembl.org/info/about/species.html

Geek for a Week. Browser Genome Release Agreement. Ensembl name and logo policy. Credits for species images. About the Ensembl Project. The main Ensembl site focuses on vertebrate genomes - scroll down. For links to our sister sites covering invertebrates, plants, bacteria, etc. View the full Ensembl species tree. NB The table below shows only those species that were included in release 75 - for an up-to-date list, please see our main site at www.ensembl.org. Felis catus 6.2. Pan troglodytes 2.1.3.

grch37.ensembl.org grch37.ensembl.org

What's New in this release

http://grch37.ensembl.org/info/website/news.html

Pairwise Interactions File Formats. Coordinate Systems for custom tracks. Track Hub Support in Ensembl. Compare genes across species. Variants for my gene. ENCODE data in Ensembl. The GRCh37 assembly in Ensembl. Use my own data. Browse News by Topic. What's New in this release. Archives: Table of assemblies. What's New in this release. News for Ensembl GRCh37. New web displays and tools. New web displays and tools. Data slicer tool (all species). Variation Pattern Finder tool (all species). Release 71 (A...

grch37.ensembl.org grch37.ensembl.org

ENCODE data in Ensembl

http://grch37.ensembl.org/info/website/tutorials/encode.html

Compare genes across species. Variants for my gene. ENCODE data in Ensembl. The GRCh37 assembly in Ensembl. Use my own data. ENCODE data in Ensembl. ENCODE data in Ensembl. ENCODE data in Ensembl. How to view ENCODE data. Multiple data tracks relating to gene regulation, based on ENCODE data can be turned on in the ' region in detail. Page on our GRCh37 archive for human and mouse. A full tutorial on how to use these tracks. Is available on the EMBL-EBI website. Link to add ENCODE integrative analysis hub.

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Ensembl Bacteria

Search for a gene. Search for a genome. Eg type esc to find Escherichia. Search for a gene. Type the name of a gene or other identifier into the search box above. Click in the 'browse a genome' box above and start typing your genome name to find matching genomes. View full list of all Ensembl Bacteria species. Access Ensembl Bacteria programmatically. What's New in Release 38. To access Ensembl Genomes data from any programming language, try our REST service. No major updates since last release. All stra...

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