badger.duq.edu

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Bayesian Analysis to Describe Genomic Evolution by Rearrangement. Version 1.02 beta, June 11, 2004. This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License, Version 2, as published by the Free Software Foundation. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Please see the GNU General Public License.

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Bayesian Analysis to Describe Genomic Evolution by Rearrangement. Version 1.02 beta, June 11, 2004. This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License, Version 2, as published by the Free Software Foundation. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Please see the GNU General Public License.

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https://badger.duq.edu

Bayesian Analysis to Describe Genomic Evolution by Rearrangement. Version 1.02 beta, June 11, 2004. This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License, Version 2, as published by the Free Software Foundation. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Please see the GNU General Public License.

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statgen.wisc.edu

Statistical Genomics Software developed at UW-Madison

http://statgen.wisc.edu/software.html

Statistical Genomics Software developed at UW-Madison. UW Stat Gen faculty. Bayesian Analysis to Describe Genomic Evolution by Rearrangement (BADGER) is a free software package for the Bayesian analysis of phylogenies. The package includes programs for analyzing genome arrangements including mitochondrial DNA. Combines molecular data from multiple loci to estimate the dominant history of sampled individuals and how much of the genome supports each relationship, using Bayesian concordance analysis.

darlinglab.org

Software

http://www.darlinglab.org/software

The Darling lab computational (meta)genomics. Our group is currently involved in the following software development projects. Phylogenetic analysis of genomes and metagenomes. Andrew And Aaron’s Awesome Assembly Pipeline (miseq enabled). A5-miseq is an updated software pipeline for de novo assembly of microbial isolate genomes from Illumina HiSeq or MiSeq data. It automates all of the usual steps in genome assembly with an easy-to-use interface. The Sequential Tree Sampler. Darling lab members have contr...

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badger.duq.edu

BADGER Registration Page

Bayesian Analysis to Describe Genomic Evolution by Rearrangement. Version 1.02 beta, June 11, 2004. This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License, Version 2, as published by the Free Software Foundation. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Please see the GNU General Public License.

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