bamarray.com

Bayesian Analysis of Variance for Microarrays

BAM takes a fundamentally different approach and focuses instead on estimating the differential effect of a gene by synthesizing information across all genes simultaneously. Rather than filtering genes, estimated effects are mapped into pattern types. BAM's special signal detection mechanism shrinks to zero estimated effects for genes unlikely to be differentially expressing, and consequently patterns of interest become highly interpretable using graphical visualization tools. BAM has been shown to be ro...

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Bayesian Analysis of Variance for Microarrays | bamarray.com Reviews

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BAM takes a fundamentally different approach and focuses instead on estimating the differential effect of a gene by synthesizing information across all genes simultaneously. Rather than filtering genes, estimated effects are mapped into pattern types. BAM's special signal detection mechanism shrinks to zero estimated effects for genes unlikely to be differentially expressing, and consequently patterns of interest become highly interpretable using graphical visualization tools. BAM has been shown to be ro...

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Bayesian Analysis of Variance for Microarrays | bamarray.com Reviews

https://bamarray.com

BAM takes a fundamentally different approach and focuses instead on estimating the differential effect of a gene by synthesizing information across all genes simultaneously. Rather than filtering genes, estimated effects are mapped into pattern types. BAM's special signal detection mechanism shrinks to zero estimated effects for genes unlikely to be differentially expressing, and consequently patterns of interest become highly interpretable using graphical visualization tools. BAM has been shown to be ro...

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bamarray.com

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Bayesian Analysis of Variance for Microarrays

http://www.bamarray.com/default.htm

BAM takes a fundamentally different approach and focuses instead on estimating the differential effect of a gene by synthesizing information across all genes simultaneously. Rather than filtering genes, estimated effects are mapped into pattern types. BAM's special signal detection mechanism shrinks to zero estimated effects for genes unlikely to be differentially expressing, and consequently patterns of interest become highly interpretable using graphical visualization tools. BAM has been shown to be ro...

2

Bayesian Analysis of Variance for Microarrays

http://www.bamarray.com/software.html

BAMarray is a user friendly Java application that runs on different operating systems. BAMarray can also be run unattended in Batch Mode initiated by a script file. Batch Mode can process several data files sequentially and save the resulting analysis to disk. Writing custom designed scripts allow users to interface with different types of software, such as Bioconductor, and R. Experimental designs with unlimited groups are accommodated. Visualization plots (similar to Figure 1. Gene labels can be toggle...

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Bayesian Analysis of Variance for Microarrays

http://www.bamarray.com/screenshots.html

See the User's Manual.

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Bayesian Analysis of Variance for Microarrays

http://www.bamarray.com/references.html

Ishwaran H. and Rao J.S. (2003). Detecting differentially expressed genes in microarrays using Bayesian model selection. Journal of the American Statistical Association, Vol 98, 438-455. Ishwaran, H. and Rao J.S. (2005a). Spike and slab gene selection for multigroup microarray data. Journal of the American Statistical Association, 100, 764-780. Ishwaran H. and Rao J.S. (2005b). Spike and slab variable selection: frequentist and Bayesian strategies. Annals of Statistics, 33, 730-773. 22 (18), 2254-2261.

5

Bayesian Analysis of Variance for Microarrays

http://www.bamarray.com/illustration.html

BAMarray colon cancer analysis involving 4 disease stages: Duke's stage B tumors (all survivors), Duke's stage C tumors, Duke's stage D tumors and METS (site of distant metastasis was the liver). See Ishwaran and Rao (2005a) for further details. Early hit-and-run genes hug the vertical axis.

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Bayesian Analysis of Variance for Microarrays

BAM takes a fundamentally different approach and focuses instead on estimating the differential effect of a gene by synthesizing information across all genes simultaneously. Rather than filtering genes, estimated effects are mapped into pattern types. BAM's special signal detection mechanism shrinks to zero estimated effects for genes unlikely to be differentially expressing, and consequently patterns of interest become highly interpretable using graphical visualization tools. BAM has been shown to be ro...

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