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BambooGDB: Bamboo Genome Database

BambooGDB: Bamboo Genome Database

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BambooGDB: Bamboo Genome Database | bamboogdb.org Reviews
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BambooGDB: Bamboo Genome Database
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BambooGDB: Bamboo Genome Database | bamboogdb.org Reviews

https://bamboogdb.org

BambooGDB: Bamboo Genome Database

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bamboogdb.org bamboogdb.org
1

BambooGDB: Bamboo Genome Database

http://www.bamboogdb.org/page/dataanalysis.jsp

1 Prediction of protein-coding genes. 2 RNA-seq in different tissues and RNA-seq data analysis. 3 Multi-level Genomic annotation. 4 Annotation of conserved non-coding RNA (ncRNA) genes. 5 Calling of heterozygous SNPs. 6 Best Arabidopsis/ Rice Hit. 8 Comparative Genome Search. 9 Protein-protein interactions (PPIs). 1 Prediction of protein-coding genes. We build a 7- step pipeline to construct the gene model set. B,the models aligned to the full- length cDNAs were preferentially collected. The splicing...

2

BambooGDB: Bamboo Genome Database

http://www.bamboogdb.org/page/microrna.jsp

MicroRNAs data of bamboo. MicroRNAs (miRNAs), a class of non-coding small endogenous RNAs with lengths of approximate 22 nucleotides, have been shown to regulate gene expression at the post-transcriptional levels by targeting mRNAs for degradation or by inhibiting protein translation. In additional, the putative target genes appeared to be involved in wide range of biological processes and most of them were classified as transcription factors, transporter and functional proteins.

3

BambooGDB: Bamboo Genome Database

http://www.bamboogdb.org/page/download.jsp

BambooGDB includes genome assemblies, annotation of genes, repeats, heterozygous SNPs, tRNA, miRNAs, full length cDNA, transcriptome data for moso bamboo. All of the data are available in download page. In comparative genome part, 7 plant genomes were used in BambooGDB database. More detail information see data resources page. Genome of Moso Bamboo ( Phyllostachys heterocycla var. pubescens. Whole Genome Sequencing of bamboo ( ERP001340. 1778 Gb (sra format). Pheterocycla-v1.0.tRNAs.gz.

4

BambooGDB: Bamboo Genome Database

http://www.bamboogdb.org/page/retrievesequences.jsp

Based the information submitted, selected sequences in whole genome sequence for moso bamboo will be displayed and downloaded. In addition, corresponding reverse sequences will be obtained. We provide retrieve a segment of DNA sequences around GENE or SCAFFOLD. You can retrieve a segment of DNA sequences in genome by using the following:. You can retrieve a segment of DNA sequences in genome by using the following:. This site recommends the best viewd with 1024x768 in IE8.

5

BambooGDB: Bamboo Genome Database

http://www.bamboogdb.org/page/functionalannotation.jsp

Browse by KEGG Orthology. KEGG (Kyoto Encyclopedia of Genes and Genomes) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies.(Cite by KEGG database). Select A Field- - - - - - - - - - - - - - -. Select A Field- - - - - - - - - - - - - - -. Posttransl...

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database.oxfordjournals.org database.oxfordjournals.org

BambooGDB: a bamboo genome database with functional annotation and an analysis platform

http://database.oxfordjournals.org/content/2014/bau006.short

View Current Issue (Volume 2016 Issue 2016). BambooGDB: a bamboo genome database with functional annotation and an analysis platform. State Forestry Administration Key Open Laboratory on the Science and Technology of Bamboo and Rattan, International Center for Bamboo and Rattan, Beijing 100102, China,. State key laboratory of tree genetics and breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China and. Tel: 86 10 8478 9802. Fax: 86 10 8478 9803. Fax: 86 10 8478 9803.

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BambooGDB: Bamboo Genome Database

IMPORTANT: Bamboo genome will be updated recently. BambooGDB, a bamboo genome database with comprehensive functional annotation and extensible analysis platform. Sequenced genome data by Bamboo Genome Project. Full-length cDNA and RNA-seq data for moso bamboo ( Phyllostachys edulis. Once-used Latin name was Phyllostachys heterocycla. And comparative genomic analysis. BambooGDB is developed with the following features briefly:. Other tools composed of retrieve sequences, protein-protein interaction and pa...

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BambooGDB: Bamboo Genome Database

IMPORTANT: Bamboo genome will be updated recently. BambooGDB, a bamboo genome database with comprehensive functional annotation and extensible analysis platform. Sequenced genome data by Bamboo Genome Project. Full-length cDNA and RNA-seq data for moso bamboo ( Phyllostachys edulis. Once-used Latin name was Phyllostachys heterocycla. And comparative genomic analysis. BambooGDB is developed with the following features briefly:. Other tools composed of retrieve sequences, protein-protein interaction and pa...

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Bamboo Geek

All about bamboo plants and other related topics. Sunday, June 26, 2016. One of the coolest places to see unusual bamboo - Disney's Epcot in Florida. Was looking through pictures today from my journeys over the years and hands down, one of my favorite places for viewing bamboo is Disney's Epcot in Florida. Of course, most of it does not grow well here in Sacramento, CA as its too cold. Nonetheless, always enjoy how they incorporate bamboo into the park's landscape. Mad Man Bamboo Nursery. And Bambusa mul...

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