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bedtools: a powerful toolset for genome arithmetic — bedtools 2.26.0 documentation

Bedtools v2.26.0. A powerful toolset for genome arithmetic. Collectively, the bedtools. Utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable. That is, set theory on the genome. For example, bedtools. Genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF. While each individual tool is designed to do a relatively simple task (e.g.,. Is developed in the Quinlan laboratory. Making a master t...

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bedtools: a powerful toolset for genome arithmetic — bedtools 2.26.0 documentation | bedtools.readthedocs.io Reviews

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Bedtools v2.26.0. A powerful toolset for genome arithmetic. Collectively, the bedtools. Utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable. That is, set theory on the genome. For example, bedtools. Genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF. While each individual tool is designed to do a relatively simple task (e.g.,. Is developed in the Quinlan laboratory. Making a master t...

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bedtools: a powerful toolset for genome arithmetic — bedtools 2.26.0 documentation | bedtools.readthedocs.io Reviews

https://bedtools.readthedocs.io

Bedtools v2.26.0. A powerful toolset for genome arithmetic. Collectively, the bedtools. Utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable. That is, set theory on the genome. For example, bedtools. Genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF. While each individual tool is designed to do a relatively simple task (e.g.,. Is developed in the Quinlan laboratory. Making a master t...

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quast.bioinf.spbau.ru

QUAST 4.4 manual

http://quast.bioinf.spbau.ru/manual.html

QUAST 4.4 manual. QUAST stands for QU. Ool The tool evaluates genome assemblies by computing various metrics. This document provides instructions for the general QUAST. Tool for genome assemblies, MetaQUAST. The extension for metagenomic datasets, and Icarus. Interactive visualizer for these tools. You can find all project news and the latest version of the tool at http:/ quast.sf.net/. An improvement over MUMmer. In addition, MetaQUAST uses MetaGeneMark. Also we use bedtools. Feedback and bug reports.

cnvkit.readthedocs.io

Text and tabular reports — CNVkit 0.8.5 documentation

http://cnvkit.readthedocs.io/en/stable/reports.html

Copy number calling pipeline. Text and tabular reports. Compatibility and other I/O. Calling copy number gains and losses. Allele frequencies and copy number. Whole-genome sequencing and targeted amplicon capture. Python API (cnvlib package). Text and tabular reports. Text and tabular reports. List the targeted genes in which a segmentation breakpoint occurs. The output is a text table of tab-separated values, which is amenable to further processing by scripts and standard Unix tools such as. If segments...

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bedtools.readthedocs.io

bedtools: a powerful toolset for genome arithmetic — bedtools 2.26.0 documentation

Bedtools v2.26.0. A powerful toolset for genome arithmetic. Collectively, the bedtools. Utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable. That is, set theory on the genome. For example, bedtools. Genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF. While each individual tool is designed to do a relatively simple task (e.g.,. Is developed in the Quinlan laboratory. Making a master t...

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