BEIRAPROJECT.ORG

luispedro.org

Biography

http://luispedro.org/biography

Also see my resume. And CV (PDF format). Luis Pedro Coelho is a postdoctoral researcher in Peer Bork’s group at the European Molecular Biology Laboratory (EMBL). He has a PhD from Carnegie Mellon University where he worked under the supervision of Prof. Bob Murphy and a MSc from Instituto Superior Técnico in Lisbon, where he worked with Prof Arlindo Oliveira. He currently works on the analysis of microbial communities in different environments, such as the marine environment. Or the human gut. Luis Pedro...

luispedro.org

Some Derivations

http://luispedro.org/derivations

Here are a few things I use all the time, so I decided to start writing them down instead of always re-deriving them on the fly. Some were checked with Sage. I tend to make silly mistakes when I think that it's just manipulations now, so I like the check. Multiplication of two gaussians. Includes all normalisations, unlike other derivations online which stop at here is a Normal distribution). Convolution of two Gaussians. Bayesian odds ratio of multinomials. Generalization of Subcellular Location.

luispedro.org

Resumé

http://luispedro.org/resume

A long-form CV is available as a PDF Version. PhD in Computational Biology, 2006 2011. Carnegie Mellon University, Pittsburgh. Modeling the Space of Subcellular Location Patterns Using Images and Other Sources of Information. Advised by Prof. Robert F. Murphy. MS in computer science, Instituto Superior Técnico (Technical University Lisbon), 2006. Bayesian Network Parameter Estimation Using Noisy Observations or Soft Evidence. Advised by Prof. Arlindo Oliveira. Finished top of my class. Shinichi Sunagawa,...

luispedro.org

SLIF

http://luispedro.org/projects/slif

Structured Literature Image Finder` (previously, *Subcellular Location Image Finder. Which was project from the Murphy Lab. Which I was a part of. It searches through scientific journals, looking for images, which it categorises, makes available, and (partially) analyses. The figure above (from Coelho et al., 2010. Is a diagram of the SLIF pipeline: figures are extracted from papers, broken up into panels and captions, which are then analysed to build navigavtion models. By Luis Pedro Coelho, Amr Ahmed, ...

luispedro.org

Mahotas

http://luispedro.org/software/mahotas

A dedicated mahotas page with documentation is available at http:/ mahotas.rtfd.org. This page is just a summary. If you are using mahotas in a scientific publication, please cite:. Coelho, L.P. 2013. Mahotas: Open source software for scriptable computer vision. Journal of Open Research Software 1(1):e3, DOI: http:/ dx.doi.org/10.5334/jors.ac. Mahotas is a set of functions for image processing and computer vision in Python. It was originally designed for bioimage informatics. The code is well documented.

kufunana.wordpress.com

Ensaiar com Beira Project | Kufunana

https://kufunana.wordpress.com/2010/07/12/ensaiar-com-beira-project

Kufunana. Beira, Moçambique. Saltar para o conteúdo. Entrevista com Júlio João II: Superstições. Novo Local →. Ensaiar com Beira Project. Julho 12, 2010. Imagem de um ensaio com a Rita e o Luis do Beira Project. Para podermos mostrar este espectáculo ao público. A Kufunana é uma associação Moçambicana que usa teatro e outras artes do espectáculo para fazer prevenção HIV/SIDA. Ver todos os artigos de kufunana →. Esta entrada foi publicada em Uncategorized. Entrevista com Júlio João II: Superstições. Está ...

luispedro.org

Erdös-Bacon

http://luispedro.org/erdos-bacon

My Erdös-Bacon number is 7. My Erdös Number is 4. Luis Pedro Coelho Robert F. Murphy [Prof. Murphy was my PhD advisor and we have several papers together. Robert F. Murphy Ziv Bar Joseph [ MR2860072. Ziv Bar Joseph Noga Alon [ MR2779292. Noga Alon Paul Erdös [ MR818591. I used the AMS Collaboration links tool. But inputting my name directly led to a longer link. My Bacon Number is 3. Luis Pedro Coelho Lisa Ann Goldsmith in Progression. Lisa Ann Goldsmith Jonathan Tucker in The Next Three Days.

luispedro.org

Jug

http://luispedro.org/software/jug

Two talks about jug coming up:. At the Heidelberg Python Meetup. 19 or 20 July. In Berlin at BOSC. Bioinformatics Open Source Conference). Light-weight, Python only, distributed computing framework. Jug allows you to write code that is broken up into tasks and run different tasks on different processors. You can also think of it as a lightweight map-reduce type of system, although it's a bit more flexible (and less scalable). Jug Documentation and Tutorial. Function is so that it does not run too fast.

luispedro.org

Projects

http://luispedro.org/projects

Generalisable Subcellular Location Analysis. Most of subcellular location analysis in the past has been pursued using datasets that contain multiple copies of the same. Protein (i.e., a specific protein is selected to serve as a nuclear protein. Another to serve as a microtubular. The algorithms we were using previously performed significantly worse in this new dataset and we thus employed new methods to achieve better results. A manuscript describing this project and its results is in press. The goal of...

luispedro.org

Fim de Tarde

http://luispedro.org/fimdetarde

Para a inês,. Só há duas coisas que Portugal tem e que mais ninguém tem: Fernando Pessoa e a luz de fim de tarde em Lisboa. Aos vinte e oito anos, casei-me. Casei-me em Lisboa. Conhecia-o então há cinco anos e tinha a certeza que aquele homem seria o homem da minha vida e o pai dos meus filhos. Nisso, não me enganei. O Fernando é o homem da minha vida. Esta frase é que não quer dizer nada do que eu pensava na altura. No tal artigo, dizia a senhora (como lhe chamar? Que nas primeiras sessões começa apenas...