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CAMEO Beta - Continuous Automated Model Evaluation - Welcome

CAMEO Beta Continuous Automated Model EvaluatiOn. 3D - Protein Structure. QE - Model Quality Estimation. CP - Contact Prediction. LB - Ligand Binding. CAMEO continuously evaluate the accuracy and reliability of predictions. 3D - Protein Stucture. QE - Model Quality Estimation. Structural models, 19. CP - Contact Prediction. Predictions in all categories are evaluated against reference structures released by the PDB on a weekly basis. CAMEO is a community project. O Taştan Bishop. When publishing any resu...

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CAMEO Beta - Continuous Automated Model Evaluation - Welcome | beta.cameo3d.org Reviews

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CAMEO Beta Continuous Automated Model EvaluatiOn. 3D - Protein Structure. QE - Model Quality Estimation. CP - Contact Prediction. LB - Ligand Binding. CAMEO continuously evaluate the accuracy and reliability of predictions. 3D - Protein Stucture. QE - Model Quality Estimation. Structural models, 19. CP - Contact Prediction. Predictions in all categories are evaluated against reference structures released by the PDB on a weekly basis. CAMEO is a community project. O Taştan Bishop. When publishing any resu...

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CAMEO Beta - Continuous Automated Model Evaluation - Welcome | beta.cameo3d.org Reviews

https://beta.cameo3d.org

CAMEO Beta Continuous Automated Model EvaluatiOn. 3D - Protein Structure. QE - Model Quality Estimation. CP - Contact Prediction. LB - Ligand Binding. CAMEO continuously evaluate the accuracy and reliability of predictions. 3D - Protein Stucture. QE - Model Quality Estimation. Structural models, 19. CP - Contact Prediction. Predictions in all categories are evaluated against reference structures released by the PDB on a weekly basis. CAMEO is a community project. O Taştan Bishop. When publishing any resu...

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beta.cameo3d.org

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CAMEO Beta - Continuous Automated Model Evaluation - CAMEO-QE: Model Quality Estimation - Overall Performance

http://beta.cameo3d.org/quality-estimation

CAMEO Beta Continuous Automated Model EvaluatiOn. 3D - Protein Structure. QE - Model Quality Estimation. CP - Contact Prediction. LB - Ligand Binding. CAMEO-QE: Model Quality Estimation 1-month Performance. Precision vs Recall curve. As for the binary classification, the residues in the dataset are classfied as negative (i.e. good local quality) and positive (i.e. bad quality) applying an arbitrary lDDT local score threshold of 60. Please refer to the Help section. All models 4 weeks. 144858 (58.49 %).

2

CAMEO Beta - Continuous Automated Model Evaluation - FAQ

http://beta.cameo3d.org/cameong_faq

CAMEO Beta Continuous Automated Model EvaluatiOn. 3D - Protein Structure. QE - Model Quality Estimation. CP - Contact Prediction. LB - Ligand Binding. Does CAMEO build models for users? No CAMEO is not a meta-server and will not answer user requests. Its sole purpose is to continuously evaluate the accuracy of prediction servers based on known experimental structures released by the PDB. Which servers will be evaluated? Or contact us directly by email if your service does not fit within these categories.

3

CAMEO Beta - Continuous Automated Model Evaluation - CAMEO-LB: Ligand Binding - Overall Performance

http://beta.cameo3d.org/lb/3-months

CAMEO Beta Continuous Automated Model EvaluatiOn. 3D - Protein Structure. QE - Model Quality Estimation. CP - Contact Prediction. LB - Ligand Binding. CAMEO-LB: Ligand Binding 3-months Performance. The data points shown in the figure illustrate the mean server response time, where larger points correspond to faster servers. The vertical bars correspond to the standard deviation of a server for the given time frame. Please refer to the Help section. For further details about the assessment procedure.

4

CAMEO Beta - Continuous Automated Model Evaluation - CAMEO-CP: Contact Prediction - Overall Performance

http://beta.cameo3d.org/cp

CAMEO Beta Continuous Automated Model EvaluatiOn. 3D - Protein Structure. QE - Model Quality Estimation. CP - Contact Prediction. LB - Ligand Binding. CAMEO-CP: Contact Prediction 1-week Statistics. All targets 1 week. Total Number of Targets:. Total Number of Predictions:. Are those software which can be downloaded and run locally, Server. Are predictors that can be accessed trough a web interface.". Model quality estimation predictors (MQAPs) is intentionally left unspecified ('-').

5

CAMEO Beta - Continuous Automated Model Evaluation - Help

http://beta.cameo3d.org/cameong_help

CAMEO Beta Continuous Automated Model EvaluatiOn. 3D - Protein Structure. QE - Model Quality Estimation. CP - Contact Prediction. LB - Ligand Binding. The help system is organized in several modules, one for each category supported in CAMEO. Should a term be used across categories it will be duplicated across all help pages for which the term applies. Please choose from the available help pages for the respective categories:. 3D - protein structure modeling. LB - ligand binding site residue prediction.

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CAMEO - Continuous Automated Model Evaluation - CAMEO-LB: Ligand Binding - Overall Performance

http://www.cameo3d.org/lb/3-months

CAMEO Continuous Automated Model EvaluatiOn. 3D - Protein Structure. LB - Ligand Binding. QE - Model Quality Estimation. CAMEO-LB: Ligand Binding 3-months Performance. The data points shown in the figure illustrate the mean server response time, where larger points correspond to faster servers. The vertical bars correspond to the standard deviation of a server for the given time frame. Please refer to the Help section. For further details about the assessment procedure. All Categories 13 weeks. Produces ...

cameo3d.org

CAMEO - Continuous Automated Model Evaluation - CAMEO-QE: Model Quality Estimation - Overall Performance

http://www.cameo3d.org/quality-estimation

CAMEO Continuous Automated Model EvaluatiOn. 3D - Protein Structure. LB - Ligand Binding. QE - Model Quality Estimation. CAMEO-QE: Model Quality Estimation 1-month Performance. Precision vs Recall curve. As for the binary classification, the residues in the dataset are classfied as negative (i.e. good local quality) and positive (i.e. bad quality) applying an arbitrary lDDT local score threshold of 60. Please refer to the Help section. For further details about the assessment procedure. All models 4 weeks.

cameo3d.org

CAMEO - Continuous Automated Model Evaluation - Participating Servers

http://www.cameo3d.org/cameong_servers/home

CAMEO Continuous Automated Model EvaluatiOn. 3D - Protein Structure. LB - Ligand Binding. QE - Model Quality Estimation. List of Participating Servers. Development server - no detailed description available. The Robetta server ( http:/ robetta.bakerlab.org. Kim DE, Chivian D, Baker D. Protein structure prediction and analysis using the Robetta server. Nucleic Acids Res. 2004 Jul 1. Http:/ dx.doi.org/10.1093/nar/gkh468. Bioinformatics, 28, 1851-1857. J Struct Funct Genomics (2009) 10(1) : 95-9. Källberg M...

openstructure.org

OpenStructure | Who is Using OpenStructure?

http://www.openstructure.org/users

Who is Using It? Who is Using OpenStructure? SWISS-MODEL - Expert System for Protein Structure Modelling. SWISS-MODEL is a widely used automated protein structure homology-modelling server for generating three-dimensional models of a protein. SWISS-MODEL automates the complex process of model building on an easy to use web based system, thereby making model information available also for non-specialists. SWISS-MODEL is available at http:/ swissmodel.expasy.org. The user can choose between the composite s...

cameo3d.org

CAMEO - Continuous Automated Model Evaluation - FAQ

http://www.cameo3d.org/cameong_faq

CAMEO Continuous Automated Model EvaluatiOn. 3D - Protein Structure. LB - Ligand Binding. QE - Model Quality Estimation. Does CAMEO build models for users? No CAMEO is not a meta-server and will not answer user requests. Its sole purpose is to continuously evaluate the accuracy of prediction servers based on known experimental structures released by the PDB. Which servers will be evaluated? Or contact us directly by email if your service does not fit within these categories. See our complete list. Ligand...

cameo3d.org

CAMEO - Continuous Automated Model Evaluation - CAMEO-3D: Protein Structure - Overall Performance

http://www.cameo3d.org/sp/3-months

CAMEO Continuous Automated Model EvaluatiOn. 3D - Protein Structure. LB - Ligand Binding. QE - Model Quality Estimation. CAMEO-3D: Protein Structure 3-months Performance. The data points showed in the figure illustrate the mean server response time, where larger points correspond to faster servers. The vertical bars correspond to the standard deviation of a server for the given time frame (only model-1 data is incorporated). Please refer to the Help section. Dataset composition 13 weeks. GDT HA GDT HA.

cameo3d.org

CAMEO - Continuous Automated Model Evaluation - Help

http://www.cameo3d.org/cameong_help

CAMEO Continuous Automated Model EvaluatiOn. 3D - Protein Structure. LB - Ligand Binding. QE - Model Quality Estimation. The help system is organized in several modules, one for each category supported in CAMEO. Should a term be used across categories it will be duplicated across all help pages for which the term applies. Please choose from the available help pages for the respective categories:. 3D - protein structure modeling. LB - ligand binding site residue prediction.

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CAMEO Beta - Continuous Automated Model Evaluation - Welcome

CAMEO Beta Continuous Automated Model EvaluatiOn. 3D - Protein Structure. QE - Model Quality Estimation. CP - Contact Prediction. LB - Ligand Binding. CAMEO continuously evaluate the accuracy and reliability of predictions. 3D - Protein Stucture. QE - Model Quality Estimation. Structural models, 19. CP - Contact Prediction. Predictions in all categories are evaluated against reference structures released by the PDB on a weekly basis. CAMEO is a community project. O Taştan Bishop. When publishing any resu...

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