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Department of Bioinformatics – BiGCaTThe department of Bioinformatics - BiGCaT, at Maastricht University
http://bigcat.unimaas.nl/
The department of Bioinformatics - BiGCaT, at Maastricht University
http://bigcat.unimaas.nl/
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Department of Bioinformatics – BiGCaT | bigcat.unimaas.nl Reviews
https://bigcat.unimaas.nl
The department of Bioinformatics - BiGCaT, at Maastricht University
Dashboard [Jenkins]
No builds in the queue. Integrated development system for software projects from or in which the Dept. of Bioinformatics - BiGCaT, Maastricht University is involved. IMPORTANT: this services is a development tool and not a download server. Test Result: 0 tests failing out of a total of 99 tests. Build stability: No recent builds failed. 1 mo 19 days - #1790. 4 min 10 sec. Test Result: 0 tests failing out of a total of 71 tests. Build stability: No recent builds failed. 8 mo 13 days - #30. 3 min 16 sec.
BiGCaT – Department of Bioinformatics
Maastricht University, The Netherlands. Our Main Projects on Software Tools and Services. Quality Control, pre-processing, normalization and statistics of Affymetrix microarrays. Database identifier mapping framework for bioinformatics applications. R package that exposes BridgeDb functionality. Metabolite identifier mapping database ( HMDB ChEBI. Pathway and Network Analysis. Pathways for the People. Get Reactome Pathways in WikiPathways GPML format. Edit and analyze biological pathways.
BiGCaT Wiki 2G
From BiGCaT Wiki 2G. Before you add or update anything here, please consider moving it to the public wiki first. Various pages which BiGCaT contributors have linked up here for interest. The links have moved to several subpages to avoid clutter here:. Tools - External links. ChIP and DNA methylation array course. Master Students Program, Manipal (also relevant for other visiting students from India). Maastricht Manipal Exchange Programme. Overview of students visiting us for internships.
Apache2 Ubuntu Default Page: It works
Apache2 Ubuntu Default Page. This is the default welcome page used to test the correct operation of the Apache2 server after installation on Ubuntu systems. It is based on the equivalent page on Debian, from which the Ubuntu Apache packaging is derived. If you can read this page, it means that the Apache HTTP server installed at this site is working properly. You should replace this file. Before continuing to operate your HTTP server. Package was installed on this server. Is always included from the main...
Bioinformatics Services - BiGCaT - Wiki
https://www.bigcat.unimaas.nl/wiki/index.php/Bioinformatics_Services
From BiGCaT - Wiki. Almost all of these projects are collaborative projects with other research groups, see the individual project pages for details. Quality Control, pre-processing, normalization and statistics of Affymetrix microarrays. Software framework for identifier mapping. Development site for Systems Biology infrastructure. Pathway editor and pathway analysis tool. Pathways for the people. NTC-R server (NTC calculation server). Affymetrix MAS5 and GCOS. Agilent Feature Extraction software. PathV...
Data sets - BiGCaT - Wiki
https://www.bigcat.unimaas.nl/wiki/index.php/Data_sets
From BiGCaT - Wiki. Data sets belonging to previous studies performed at BiGCaT bioinformatics. An overview of the countries that produced most biomedical publications in Pubmed. Published as: Nature Europe site should highlight most productive countries. Chris Evelo and Andra Waagmeester Nature 465 (7299), 685 (10 Jun 2010). GenMAPP pathway analysis results. Br J Nutr 1-9 Ju. BMC Bioinformatics 7: 04. Other datasets are available here. Talk for this IP address. This page has been accessed 26,204 times.
Vacancies - BiGCaT - Wiki
https://www.bigcat.unimaas.nl/wiki/index.php/Vacancies
From BiGCaT - Wiki. There are currently no vacancies. We try to keep this page up to date. But new positions will always be posted to the academic transfer website. Retrieved from " http:/ www.bigcat.unimaas.nl/wiki/index.php? Talk for this IP address. This page was last modified on 30 August 2015, at 16:19. This page has been accessed 42,542 times. About BiGCaT - Wiki.
Scientific Output - BiGCaT - Wiki
https://www.bigcat.unimaas.nl/wiki/index.php/Scientific_Output
From BiGCaT - Wiki. Articles, Chapters, Conference Proceedings, Data Sets, etc). Retrieved from " http:/ www.bigcat.unimaas.nl/wiki/index.php? Talk for this IP address. This page was last modified on 13 January 2016, at 12:44. This page has been accessed 30,296 times. About BiGCaT - Wiki.
BiGCaT people - BiGCaT - Wiki
https://www.bigcat.unimaas.nl/wiki/index.php/BiGCaT_people
From BiGCaT - Wiki. Ex]visitors of the BiGCaT group. Alumni of the BiGCaT group. Ex]Students working at BiGCaT. Prof Dr. Chris Evelo. Chris started the BiGCaT group in 2001. Google Scholar: 2dm Du0AAAAJ. Dr Susan LM Coort. Lars is a postdoc whose primary task is the bioinformatics support for NuGO focus teams. He currently develops new QC, normalisation and analytical pipelines in R/Bioconductor and is a co-organizer of the Maastricht advanced microarray course. Martina is a Postdoc at BiGCaT and the Maa...
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BridgeDb | standardized access to gene, protein and metabolite identifier mapping services
http://www.bridgedb.org/home
Standardized access to gene, protein and metabolite identifier mapping services. Skip to primary content. Skip to secondary content. BridgeDb is a framework for finding and mapping equivalent database identifiers. It has many facets: it is both a framework, live services, and are identifier mapping files for genes, proteins, and metabolites. The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services. The Application Programming Interface. Heroit Watt Universit...
Systems Bioinformatics - BioAssist
https://wiki.nbic.nl/index.php/Systems_Bioinformatics
NBIC is one of the partners within the Netherlands Consortium for Systems Biology NCSB. Five participating NBIC groups. Academic Medical Centre (AMC), Bioinformatics Laboratory. Antoine van Kampen, Andrew Gibson, Eelke van der Horst, Jack Vink. Leiden University (UL), Leiden Institute of Advanced Computer Science (LIACS). Joost Kok, Arno Knobbe, Marvin Meeng. Maastricht University (UM), Department of Bioinformatics - BiGCaT. Chris Evelo, Anwesha Dutta, Martina Kutmon. Hans van Beek, Hilal Taymaz-Nikerel.
GenMAPP - About Us
http://root2.genmapp.org/about.html
GenMAPP.org is an academic organization that develops and supports GenMAPP (Gene Map Annotator and Pathway Profiler), a computer application designed to visualize gene expression data on maps representing biological pathways and groupings of genes. GenMAPP-CS will incorporate core capabilities of Cytoscape, while adding GenMAPP-specific functionality. To learn more about specific aims for the GenMAPP-CS project, please visit our GenMAPP-CS wiki. Is an open, public space for content editing dedicated to b...
chem-bla-ics: August 2014
http://chem-bla-ics.blogspot.com/2014_08_01_archive.html
Saturday, August 30, 2014. On Open Access in The Netherlands. Yesterday, I received a letter from the Association of Universities The Netherlands. More than concentration. Concentration of funding in Top research institutes has not been extensively evaluated, but I think the efficiency is not proven higher than previous funding approaches. Anyway, this letter I received is part of their Open Access program. Therefore, giving the outlined importance and impact of Dutch research, I found it relevant to pos...
chem-bla-ics: September 2014
http://chem-bla-ics.blogspot.com/2014_09_01_archive.html
Thursday, September 25, 2014. Slides at the Open PHACTS community workshop (June 26). It seems had not posted my slides yet of the presentation at the 6th Open PHACTS community workshop. At this meeting I gave an overview of the Programming in the Life Sciences. Course we give to 2nd and 3rd year students of the Maastricht Science Programme. MSP; some participants graduated this summer, see the photo on the right side). The students come up with! Given that the Open PHACTS API. Of the full consortium!
Speakers | BioSB research school
http://biosb.nl/sbnl2014/speakers
Netherlands Bioinformatics and Systems Biology Research School. Minutes meeting April 2016. BioSB statutes & regulations. Affiliated research & graduate schools. BioSB Team & Committees. NBIC magazine ‘Interface’. Systems biology community (SB@NL / ex-NCSB). The SB@NL2014 symposium programme consists of 7 sessions divided over two days. Each session features 2 invited speakers, followed by 2 selected speakers (selected from the submitted abstract). In total, the symposium boasts seventeen (17! Assembly a...
Personalised Nutrition 2.0 Congress - Speaker Faculty
http://personalisednutrition-eu.com/agenda/speakers
Personalised Nutrition 2.0 Congress - Speaker Faculty. June 22-23, 2016 Movenpick Hotel, Amsterdam. Why Attend the Personalised Nutrition 2.0? Sponsors & Exhibitors. Become A Personalized Nutrition Europe Sponsor or Exhibitor. Personalized Nutrition in the News. Venue & Accommodations. Sign Up for Our Free Newsletter. Contact the Personalised Nutrition 2.0 Team. Personalised Nutrition 2.0 Speaker Faculty. Covington and Burling LLP. Director at Eurogenetica and Chief Scientific Officer. Thijs Geijer is ba...
PathVisio - PathVisio - pathway drawing and analysis tool
http://www.pathvisio.org/about/pathvisio
A tool to edit and analyze biological pathways. PathVisio – pathway drawing and analysis tool. Skip to primary content. Skip to secondary content. PathVisio is an open source project founded by the Department of Bioinformatics at Maastricht University and the Gladstone Institutes. PathVisio is supported by. National Resource for Network Biology. Agilent (thought leader award of Dr. Chris Evelo).
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Department of Bioinformatics – BiGCaT
Department of Bioinformatics – BiGCaT. Paper: Pathway analysis of transcriptomic data shows immunometabolic effects of vitamin D. Paper: Current developments in the genetics of Rett and Rett-like syndrome. OA Paper: WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research. Paper: A Review of Pathway-Based Analysis Tools That Visualize Genetic Variants. Follow us on Twitter. Tweets by @bigcat um.
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