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BiMat : BiMatA MATLAB framework to facilitate the analysis of bipartite complex networks
http://bimat.github.io/
A MATLAB framework to facilitate the analysis of bipartite complex networks
http://bimat.github.io/
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BiMat : BiMat | bimat.github.io Reviews
https://bimat.github.io
A MATLAB framework to facilitate the analysis of bipartite complex networks
bimat.github.io
BiMat : Getting Started
http://bimat.github.io/inst/getting_started.html
A MATLAB framework to facilitate the analysis of bipartite complex networks. BiMat Ver. 1.0. You can download the start guide in the link below. This document contains complete examples to start using. Which complements the examples found in this website:. Copy the downloaded zip file to a directory of interest and unzip it. Next, you will need to add. Path either temporally or permanently:. Replace next line with your appropiate path'. Bimat user path = 'mypackages/bimat'. Alternatively, the user can add.
BiMat : Network Statistics
http://bimat.github.io/stats/network_statistics.html
A MATLAB framework to facilitate the analysis of bipartite complex networks. As described in the null models section, modularity and nestedness values lack statistical significance if they are not compared with an appropiate null model. Further, an appropiate ensamble of those random networks need to be created in order to analyze those networks. Altought the user can use. Null models for designing his own statistical tests,. Comes already with an. That helps the user to perform such tests. Pformat.u...
BiMat : Bipartite class
http://bimat.github.io/bip/bipartite.html
A MATLAB framework to facilitate the analysis of bipartite complex networks. Is the fundamental class of the. Software. This class works as an encapsulator of most of the available classes. Altough it is possible to work with. Class, its use facilitates the access to most of the. The main input of the Bipartite class is a matlab matrix, where the rows will represent the node set $R$ and the columns the node set $C$, such that if the element. There exist many ways of creating a. Creating it from scratch.
BiMat : Nestedness
http://bimat.github.io/alg/nestedness.html
A MATLAB framework to facilitate the analysis of bipartite complex networks. Example 1: Calculating Nestedness. Example 2: Accesing detailed results. Example 3: Different degrees of nestedness. Nestedness describes the extent to which interactions form ordered subsets of each other. There are several indices for quantifying nestedness. Implements two of the most commonly used methods, namely, NTC (Nestedness Temperature Calculator) (see Atmar et al 1993. Example 1: Calculating Nestedness. Nestedness NODF...
BiMat : Configuration
http://bimat.github.io/inst/configuration.html
A MATLAB framework to facilitate the analysis of bipartite complex networks. Default Values: Options.m File. Functions can work without the need of parameters by the user. However, if the user does not specify the required arguments, BiMat will use the default ones. These values are specified on the file. That the user can modify according to his needs. The next sections indicate the default parameters of. A two-tail test is the default way of testing for significance in. P VALUE = 0.05. Allows these kin...
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methodsinecologyandevolution.org
Application Papers - Methods in Ecology and Evolution
http://www.methodsinecologyandevolution.org/view/0/applicationpapers.html
Recognising the need for a citable description of new methods and techniques in ecology and evolution, our Application papers describe new software, equipment, or other practical tools, with the intention of promoting and maximising the uptake of these new approaches. In order to disseminate the newest advances as broadly as possible, we are pleased to be able to offer free access. To all Application papers published in. Methods in Ecology and Evolution. Online 21st July 2016. Bull; Download inbreedR.
>Projects by Sergi Valverde
http://svalver.github.io/proj
Projects by Sergi Valverde. Netlab: Visualization and Analysis of Complex Networks. For an example of our network approach to study the large-scale evolution of programming languages. For an example of real-time rendering in our Netlab tool. BiMat: Analysis of Bipartite Ecological Networks. Download the source code here. And the documentation here. In Chimera, evolutionary dynamics are modelled with computer simulations that explicitly consider the physical embodiment of natural populations. Current ...
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BiMat : BiMat
A MATLAB framework to facilitate the analysis of bipartite complex networks. BiMat is a MATLAB library whose main function is the analysis of modularity and nestedness in bipartite ecological networks. Its main features are:. Modularity and nestedness calculation. Diversity calculation using Shannon and Simpsons indexes. Different null models for the creation of random bipartite networks. Statistics of the network. Internal statistics of the modules (multi-scale analysis).
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