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| Bio-Ontologies SIG

Knowledge of the past, for readers of the future. Provides a forum for discussion of the latest and most innovative research in the appplication of ontologies and more generally the organisation, presentation and dissemination of knowledge in biomedicine and the life sciences. Bio-Ontologies has existed as a SIG at ISMB. For 13 years, making it one of the longest running. Site is a kblog. By the UK Web Archive. This kblog is the first. Of its kind, and now hosts 3 years of Bio-Ontologies papers.

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| Bio-Ontologies SIG | bio-ontologies.knowledgeblog.org Reviews
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Knowledge of the past, for readers of the future. Provides a forum for discussion of the latest and most innovative research in the appplication of ontologies and more generally the organisation, presentation and dissemination of knowledge in biomedicine and the life sciences. Bio-Ontologies has existed as a SIG at ISMB. For 13 years, making it one of the longest running. Site is a kblog. By the UK Web Archive. This kblog is the first. Of its kind, and now hosts 3 years of Bio-Ontologies papers.
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| Bio-Ontologies SIG | bio-ontologies.knowledgeblog.org Reviews

https://bio-ontologies.knowledgeblog.org

Knowledge of the past, for readers of the future. Provides a forum for discussion of the latest and most innovative research in the appplication of ontologies and more generally the organisation, presentation and dissemination of knowledge in biomedicine and the life sciences. Bio-Ontologies has existed as a SIG at ISMB. For 13 years, making it one of the longest running. Site is a kblog. By the UK Web Archive. This kblog is the first. Of its kind, and now hosts 3 years of Bio-Ontologies papers.

INTERNAL PAGES

bio-ontologies.knowledgeblog.org bio-ontologies.knowledgeblog.org
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2013 September | Bio-Ontologies SIG

http://bio-ontologies.knowledgeblog.org/date/2013/09

Knowledge of the past, for readers of the future. Archive For September 2013. BioAssay Ontology: Modularization, Integration and Applications. On September 23, 2013 by Phillip Lord in 2013. 1 Introduction The lack of established and widely-used standards to describe and annotate biological assays and screening results in the domain of chemical probe and drug discovery is a []. Please cite this resource as: Bio-Ontologies SIG http:/ bio-ontologies.knowledgeblog.org. Download resource as: [bib].

2

Year | Bio-Ontologies SIG

http://bio-ontologies.knowledgeblog.org/category/year

Knowledge of the past, for readers of the future. Posts In Category Year. BioAssay Ontology: Modularization, Integration and Applications. On September 23, 2013 by Phillip Lord in 2013. 1 Introduction The lack of established and widely-used standards to describe and annotate biological assays and screening results in the domain of chemical probe and drug discovery is a []. Dizeez: an online game for human gene-disease annotation. On October 23, 2012 by Phillip Lord in 2012. On by Phillip Lord in 2012.

3

2012 May | Bio-Ontologies SIG

http://bio-ontologies.knowledgeblog.org/date/2012/05

Knowledge of the past, for readers of the future. Archive For May 2012. DOMEO: a web-based tool for semantic annotation of online documents. On May 9, 2012 by Phillip Lord in 2011. DOMEO (Document Metadata Exchange Organizer), is an extensible web application enabling users to visually and efficiently create and share ontology-based annotation metadata on HTML or XML document []. Please cite this resource as: Bio-Ontologies SIG http:/ bio-ontologies.knowledgeblog.org. Download resource as: [bib].

4

2012 August | Bio-Ontologies SIG

http://bio-ontologies.knowledgeblog.org/date/2012/08

Knowledge of the past, for readers of the future. Archive For August 2012. Bottom-up curation of terminology for experimental variables: the Ontology of Experimental Variables and Values (OoEVV). On August 17, 2012 by Phillip Lord in 2012. Introduction The challenges of developing an effective biomedical knowledge representation (KR) include (a) expressing the correct logic of domain-specific concepts in a reusable way, (b) excluding extraneous ontological []. Download resource as: [bib].

5

2011 | Bio-Ontologies SIG

http://bio-ontologies.knowledgeblog.org/category/year/2011

Knowledge of the past, for readers of the future. Posts In Category 2011. A data-driven approach to automatic discovery of prescription drugs in cardiovascular risk management. On October 4, 2012 by Phillip Lord in 2011. Abstract Objectives: To evaluate a data-driven approach for automatically identifying medications used in the treatment of cardiovascular disease, and consider how these learned rules might be applied to ontology []. DOMEO: a web-based tool for semantic annotation of online documents.

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2011 June | Knowledge Blog

http://knowledgeblog.org/date/2011/06

Scientific Publishing for the Web Generation. Archive For June 2011. Introducing the Bioinformatics Knowledgeblog. On June 28, 2011 by Phillip Lord in Events. Last week (21st June), a small group of bioinformaticians gathered in a little room in the basement of a building on the campus of Newcastle University, and quietly bashed []. The Ontogenesis Knowledgeblog: Lightweight Semantic Publishing. On June 7, 2011 by Phillip Lord in Papers. Download resource as: [bib]. Knowledgeblog Table of Contents Plugin.

knowledgeblog.org knowledgeblog.org

Uncategorized | Knowledge Blog

http://knowledgeblog.org/category/uncategorized

Scientific Publishing for the Web Generation. Posts In Category Uncategorized. On August 19, 2013 by Lindsay Marshall in Uncategorized. Just added support to Greycite for some proprietary meta tags used by Walters Kluwer Health journals. These let us get a full set of metadata from the pages. On March 22, 2013 by Lindsay Marshall in Uncategorized. Phil Lord has been nagging me to post about the things that I have been changing and adding to the Greycite implementation, so : pubmed : if you pass [].

knowledgeblog.org knowledgeblog.org

2011 March | Knowledge Blog

http://knowledgeblog.org/date/2011/03

Scientific Publishing for the Web Generation. Archive For March 2011. On March 29, 2011 by Simon Cockell in Press. Phil Lord from the Knowledgeblog project has been at the JISCMRD International Workshop in Birmingham this week. There he gave a talk: Data linking with kblog View more presentations []. Please cite this resource as: Knowledge Blog http:/ knowledgeblog.org. Download resource as: [bib]. Knowledgeblog Table of Contents Plugin. Health and Public Health.

knowledgeblog.org knowledgeblog.org

2013 April | Knowledge Blog

http://knowledgeblog.org/date/2013/04

Scientific Publishing for the Web Generation. Archive For April 2013. On April 17, 2013 by Lindsay Marshall in tech. Greycite will now return citations in RIS format (http:/ en.wikipedia.org/wiki/RIS (file format) , though with the caveat that the Type record value is always set to be ELEC – it is difficult in []. Please cite this resource as: Knowledge Blog http:/ knowledgeblog.org. Download resource as: [bib]. Knowledgeblog Table of Contents Plugin. Health and Public Health.

knowledgeblog.org knowledgeblog.org

Who are we? | Knowledge Blog

http://knowledgeblog.org/who-are-we-3

Scientific Publishing for the Web Generation. The current knowledgeblog team is are all active scientists broadly coming from interdisciplinary biomedical and computing science backgrounds. We have developed knowledgeblog out of a desire to improve communication and the accessibility of knowledge both within and outside of science. Contributed to the development of the knowledgeblog platform. Currently, he is the manager of the Newcastle University Bioinformatics Support Unit, where he aids biologica...

knowledgeblog.org knowledgeblog.org

MathJax-Latex WordPress Plugin | Knowledge Blog

http://knowledgeblog.org/mathjax-latex-wordpress-plugin

Scientific Publishing for the Web Generation. The Knowledgeblog team have developed a plugin for WordPress that allows the easy inclusion of mathematical equations in blogposts. It leverages the MathJax. Javascript library to produce scalable, accessible, attractive graphical equations from standard LaTeX. Syntax embedded in posts. You can download the latest version of the plugin: Version 0.2 [wordpress.org]. The mathjax-latex settings page lets you configure how the plugin works. 8230;] the MathJax-LaT...

knowledgeblog.org knowledgeblog.org

Advantages for Reviewers | Knowledge Blog

http://knowledgeblog.org/advantages-for-reviewers

Scientific Publishing for the Web Generation. Bottom line, you get very little out of reviewing at the moment: you don’t get paid, you don’t get acknowledged, your work goes into a blackhole. The only real advantage, is you get to read papers before they are published; it’s a service to the community. With knowledgeblog, on the other hand, your reviews are public; perhaps, a bit scary at first, but it means that your comments, your ideas have your name attached to them. Health and Public Health.

knowledgeblog.org knowledgeblog.org

2013 August | Knowledge Blog

http://knowledgeblog.org/date/2013/08

Scientific Publishing for the Web Generation. Archive For August 2013. On August 19, 2013 by Lindsay Marshall in Uncategorized. Just added support to Greycite for some proprietary meta tags used by Walters Kluwer Health journals. These let us get a full set of metadata from the pages. Please cite this resource as: Knowledge Blog http:/ knowledgeblog.org. Download resource as: [bib]. Knowledgeblog Table of Contents Plugin. Health and Public Health.

knowledgeblog.org knowledgeblog.org

Press | Knowledge Blog

http://knowledgeblog.org/category/all/press

Scientific Publishing for the Web Generation. Posts In Category Press. On March 29, 2011 by Simon Cockell in Press. Phil Lord from the Knowledgeblog project has been at the JISCMRD International Workshop in Birmingham this week. There he gave a talk: Data linking with kblog View more presentations []. On January 13, 2011 by Phillip Lord in Press. Please cite this resource as: Knowledge Blog http:/ knowledgeblog.org. Download resource as: [bib]. Knowledgeblog Table of Contents Plugin.

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| Bio-Ontologies SIG

Knowledge of the past, for readers of the future. Provides a forum for discussion of the latest and most innovative research in the appplication of ontologies and more generally the organisation, presentation and dissemination of knowledge in biomedicine and the life sciences. Bio-Ontologies has existed as a SIG at ISMB. For 13 years, making it one of the longest running. Site is a kblog. By the UK Web Archive. This kblog is the first. Of its kind, and now hosts 3 years of Bio-Ontologies papers.

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Bio-Ontologies 2018

Is an ISMB Community of Special Interest (COSI). That covers the latest and most innovative research in the application of ontologies and more generally the organisation, presentation and dissemination of knowledge in biomedicine and the life sciences. Bio-Ontologies is celebrating its 21th year at ISMB 2018. And the W3C’s Healthcare and Life Sciences interest group (HCLSIG). Selected papers will be invited to submit an. April 6, 2018. April 27, 2018. May 1, 2018. June 7, 2018. June 17, 2018. Deadlines a...

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Welcome to the E-formare Platform. E-Formare is intended to provide a technological support to the knoweldge sharing and transfer activities, also to ensure the accessibility to Project contents over time, within the framework of the project BIO-OPERATE - "BIO-safety, BIO-security and BIO-risk management knowledge development and transfer of best practices. Project n.25), within the EU CBRN CoE Risk Mitigation Initiative. The EU CBRN Risk Mitigation CoE Initiative is jointly implemented. And has been lau...