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IFOM - Bioinformatics tools DNA Analysis

IFOM Bioinformatics tools DNA Analysis

http://bio-webout.ifom.eu/

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IFOM - Bioinformatics tools DNA Analysis | bio-webout.ifom.eu Reviews
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IFOM Bioinformatics tools DNA Analysis
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IFOM - Bioinformatics tools DNA Analysis | bio-webout.ifom.eu Reviews

https://bio-webout.ifom.eu

IFOM Bioinformatics tools DNA Analysis

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1

UG MACHINE

https://bio-webout.ifom.eu/ll2ug

The UniGene machine at IFOM. Convert gene identifiers to Accession Number of in-house UniGene Library clones. Please read the help page. Before using this program. You can enter multiple items separeted by a carriage return or a comma. Created by Lelio Lassandro and Alessandro Guffanti, IFOM maintained by Davide Cittaro, Cogentech c/o IFOM-IEO Campus last update Dec 11st, 2007.

2

The CAP Sequence Assembly Machine

https://bio-webout.ifom.eu/cap

The CAP EST Assembler. Maximum sequence length for each sequence is 30.000 - Maximum number of sequences 10.000. Timeout for interactive assembly is 5 minutes - Maximum uploadable data is 1 Megabyte. MAXIMUM FRAGMENT LENGTH IS 30.000 bp - this software is optimized for EST assembly. Enter sequences to assemble below, in FASTA format. As an alternative, you can upload your sequences from a file. Uploaded files will have priority upon pasted sequences. Overlap Length Cutoff ( 20):.

3

The DNA Sequence Quality Machine

https://bio-webout.ifom.eu/phred

The DNA Sequence Quality Machine at IFOM. Base Calling, Chromatogram Display and High Quality Sequence Region evaluation (pscan-20 and pscan-30). Upload your ABI or SCF raw data file(s). You can upload 1 Mb max. Use Phred Base Call - No Trim. Use Phred Base Call - Trim Sequences. Use Original Base Call. Created by Lelio Lassandro, IFOM maintained by Davide Cittaro, Cogentech c/o IFOM-IEO Campus last update Dec 14th, 2007.

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