bio2rdf.org

Bio2RDF v2.7a

Linked Data for the Life Sciences. Select an ID example. Affymetrix on GeneChip HT Mouse Genome MG-430B [affymetrix:1415765 at]. Comparing Three Anti-HIV Drug Regimens [clinicaltrials:NCT00050895]. Arsenic-MIR15B chemical-gene association [ctd resource:D001151406949]. ASPN frameshift variant [dbsnp:rs199422184]. HomoloGene Group 8260 [homologene:8260]. APOBEC1 complementation factor [hgnc:24086]. Ribonuclease P (RNase P) Family [interpro:IPR000100]. The LSR entry for dbSNP [lsr:dbsnp].

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Bio2RDF v2.7a | bio2rdf.org Reviews

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Linked Data for the Life Sciences. Select an ID example. Affymetrix on GeneChip HT Mouse Genome MG-430B [affymetrix:1415765 at]. Comparing Three Anti-HIV Drug Regimens [clinicaltrials:NCT00050895]. Arsenic-MIR15B chemical-gene association [ctd resource:D001151406949]. ASPN frameshift variant [dbsnp:rs199422184]. HomoloGene Group 8260 [homologene:8260]. APOBEC1 complementation factor [hgnc:24086]. Ribonuclease P (RNase P) Family [interpro:IPR000100]. The LSR entry for dbSNP [lsr:dbsnp].

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Bio2RDF v2.7a | bio2rdf.org Reviews

https://bio2rdf.org

Linked Data for the Life Sciences. Select an ID example. Affymetrix on GeneChip HT Mouse Genome MG-430B [affymetrix:1415765 at]. Comparing Three Anti-HIV Drug Regimens [clinicaltrials:NCT00050895]. Arsenic-MIR15B chemical-gene association [ctd resource:D001151406949]. ASPN frameshift variant [dbsnp:rs199422184]. HomoloGene Group 8260 [homologene:8260]. APOBEC1 complementation factor [hgnc:24086]. Ribonuclease P (RNase P) Family [interpro:IPR000100]. The LSR entry for dbSNP [lsr:dbsnp].

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drugbank.bio2rdf.org

Welcome to OpenLink Virtuoso Universal Server

Your user agent does not support frames or is currently configured not to display frames. However, you may visit Start menu. OpenLink Virtuoso is a next-generation Universal Server that facilitates the development and deployment of a new generation of Enterprise-wide, Internet, Intranet, and Extranet-based solutions, transcending prevalent enterprise challenge areas such as Disparate Databases and Data Sources, Web Service Composition, and Business Process Management.

cu.bio2rdf.org

Bio2RDF

Select an ID example. Plastid acetate CoA-transferase complex [go:0032283]. PAGET DISEASE OF BONE; PDB [omim:602080]. Serotonin receptor 1B (symbol:5-HT1B,taxon:7227) [geneid:37191]. Probeset 1415765 at on GeneChip HT Mouse Genome MG-430B (Mus musculus) [affymetrix:1415765 at]. Trifluoperazine Hydrochloride (5 mg/1 trifluoperazine hydrochloride) [ndc:0781-1034]. HomoloGene Group 8260 [homologene:8260]. 3 component complex identified by protein cross-linking with a bifunctional reagent [dip:DIP-57266E].

download.bio2rdf.org

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taxonomy.bio2rdf.org

Welcome to OpenLink Virtuoso Universal Server

Your user agent does not support frames or is currently configured not to display frames. However, you may visit Start menu. OpenLink Virtuoso is a next-generation Universal Server that facilitates the development and deployment of a new generation of Enterprise-wide, Internet, Intranet, and Extranet-based solutions, transcending prevalent enterprise challenge areas such as Disparate Databases and Data Sources, Web Service Composition, and Business Process Management.

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gsocsemantic.wordpress.com

Parsing with PubliSci Part 2: Being a good Semantic Citizen | Semantic Web for Bioinformatics

https://gsocsemantic.wordpress.com/2013/09/03/parsing-with-publisci-part-2-being-a-good-semantic-citizen

Semantic Web for Bioinformatics. A Project for SciRuby in GSOC 2013. Skip to primary content. Parsing with PubliSci Part 2: Being a good Semantic Citizen. September 3, 2013. Once you have created a basic converter. Using PubliSci’s Base reader class, it’s important that you work to improve the links between your dataset and others, and use terms and descriptions that others will understand. Universal, Resolvable Identifiers. Serves to uniquely identify the gene RBFOX1 in the maf reader’s output, bu...

gsocsemantic.wordpress.com

strinzgsoc | Semantic Web for Bioinformatics

https://gsocsemantic.wordpress.com/author/strinzgsoc

Semantic Web for Bioinformatics. A Project for SciRuby in GSOC 2013. Skip to primary content. Skip to secondary content. Rise of the Machines: Using SADI to Augment Your Data. September 17, 2013. As discussed in my last post. SADI: Semantic Automated Discovery and Integration. One particular project that illustrates this is SADI. SADI is not so much a tool or piece of software as a set of standards for service interoperability, grounded in and supported by the existing standards of the internet and the s...

neurocommons.org

Reading room - NeuroCommons

http://neurocommons.org/page/Reading_room

See also: Science Commons reading room. Recommendations for independent scholarly publication of data sets. Alan Ruttenberg, Jonathan A. Rees, Matthias Samwald, and M. Scott Marshall. "Life sciences on the Semantic Web: the Neurocommons and beyond." Briefings in Bioinformatics. 2009; doi: 10.1093/bib/bbp004. abstract. Ruttenberg et al. Advancing translational research with the Semantic Web. Scott Marshall et al. A prototype knowledge base for the life sciences. W3C interest group note, 2008. Content on t...

1.okbqa.org

Documentation - OKBQA (Open Knowledge Base and Question Answering) 2014

http://1.okbqa.org/hackathon2014/documentation

The goal of the hackathon was to devise a preliminary instantiation of a generic architecture for question answering on Linked Data. In the following, we begin by presenting key requirements to the architecture. We then present the architecture itself and describe the functionality of each of its module. We include preliminary implementations and identify components that must still be implemented. Finally, we describe our approach to evaluating our system. Disambiguation: This module an element the outpu...

2.okbqa.org

Resources - okbqa2

http://2.okbqa.org/hackathon2015/resources

This page lists relevant resources to the OKBQA hackathon with specification to the contact person. Natural language query processing system over LOD (Jin-Dong Kim, Kevin Cohen). TBSL - Template-based Question Answering over RDF data. Dictionary-based text and term annotation (Jin-Dong Kim). Annotator - annotate text using bioportal ontologies using exact or substring matches (Michel Dumontier). Search the repository of 6M terms in 375 ontologies (Michel Dumontier). KBs and Linked Open Data Projects.

2.okbqa.org

Documentation - okbqa2

http://2.okbqa.org/hackathon2015/documentation

The goal of the hackathon was to devise a preliminary instantiation of a generic architecture for question answering on Linked Data. In the following, we begin by presenting key requirements to the architecture. We then present the architecture itself and describe the functionality of each of its module. We include preliminary implementations and identify components that must still be implemented. Finally, we describe our approach to evaluating our system. This module an element the output of the templat...

1.okbqa.org

Invitees - OKBQA (Open Knowledge Base and Question Answering) 2014

http://1.okbqa.org/hackathon2014/Invitees

Pablo N. Mendes.

4.okbqa.org

Resources - OKBQA-4

http://4.okbqa.org/development/resources

OKBQA Workshop at COLING 2016. This page lists relevant resources to the OKBQA hackathon with specification to the contact person. Natural language query processing system over LOD (Jin-Dong Kim, Kevin Cohen). TBSL - Template-based Question Answering over RDF data. Dictionary-based text and term annotation (Jin-Dong Kim). Annotator - Annotates text using bioportal ontologies using exact or substring matches. (Michel Dumontier). Searches the repository of 6M terms in 375 ontologies. (Michel Dumontier).

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Bio2RDF: Linked Data for the Life Sciences. The Bio2RDF project uses open-source Semantic Web technologies to provide interlinked life science data to support biological knowledge discovery. Using both syntactic and semantic data integration techniques, Bio2RDF puts into practice a simple methodology to generate and seamlessly integrate machine-interpretable data that can be powerfully interograted with SPARQL-based queries to answer sophisticated questions. Tuesday, December 22, 2015. The first step of ...

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Bio2RDF v2.7a

Linked Data for the Life Sciences. Select an ID example. Affymetrix on GeneChip HT Mouse Genome MG-430B [affymetrix:1415765 at]. Comparing Three Anti-HIV Drug Regimens [clinicaltrials:NCT00050895]. Arsenic-MIR15B chemical-gene association [ctd resource:D001151406949]. ASPN frameshift variant [dbsnp:rs199422184]. HomoloGene Group 8260 [homologene:8260]. APOBEC1 complementation factor [hgnc:24086]. Ribonuclease P (RNase P) Family [interpro:IPR000100]. The LSR entry for dbSNP [lsr:dbsnp].

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