bio4j.com
- bio4jBio4j is a bioinformatics graph data platform, integrating most data available in Uniprot KB (SwissProt + Trembl), Gene Ontology ...
http://www.bio4j.com/
Bio4j is a bioinformatics graph data platform, integrating most data available in Uniprot KB (SwissProt + Trembl), Gene Ontology ...
http://www.bio4j.com/
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Eduardo Pareja Tallo
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Eduardo Pareja Tallo
BIC Granada Avda ●●●●●●●●●●●●●●●●●e Tecnologico Cie
Ar●●la , 18100
ES (Spain)
View this contact
Eduardo Pareja Tallo
BIC Granada Avda ●●●●●●●●●●●●●●●●●e Tecnologico Cie
Ar●●la , 18100
ES (Spain)
View this contact
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- bio4j | bio4j.com Reviews
https://bio4j.com
Bio4j is a bioinformatics graph data platform, integrating most data available in Uniprot KB (SwissProt + Trembl), Gene Ontology ...
bio4j.com
about - bio4j
http://bio4j.com/about
Bio4j is a project initiated and led by Oh no sequences! Project leader and main developer. Project leader, technical lead, architecture. Statika and release process, Scala, developer.
community - bio4j
http://bio4j.com/community
Issues, help, feedback. Group is a good place for all sort of feedback, user experiences, generic questions, whatever. If you prefer a more real-time experience, join the bio4j/bio4j gitter room. If you are having issues with something concrete about bio4j, though, it is probably better to open an issue in the corresponding repository; you can get a list from the bio4j github org. Page If you don’t know where exactly this should go, bio4j/bio4j. In your issue text.
code - bio4j
http://bio4j.com/code
Bio4j is developed in Java. Licensed under the AGPLv3. License. All development happens in GitHub, under the bio4j. Organization; in particular the bio4j/bio4j. Repository acts as an entry point for the whole codebase. There’s bio4j/bio4j gitter room. We also use the issues from the bio4j/bio4j repository. For general discussions, feedback, and communication between developers. With respect to contribution formalities we try to:. Keep things as simple. As possible for everyone. You sign your commits using.
bio4j
http://bio4j.com/blog
A citable preprint in the bioRxiv. Describing Bio4j went online yesterday:. Bio4j: a high-performance cloud-enabled graph-based data platform. We will submit a paper based on this preprint to an open access journal. For completeness, here’s the citation info and the abstract:. Bio4j: a high-performance cloud-enabled graph-based data platform. Pablo Pareja-Tobes, Raquel Tobes, Marina Manrique, Eduardo Pareja, Eduardo Pareja-Tobes. We’ve spent the past few months working. A new graph schema and API. We hav...
docs - bio4j
http://bio4j.com/docs
The entry point for bio4j documentation is at the main bio4j repository; if you don’t know exactly what you are looking for, go there:. In general, bio4j documentation is written in markdown, and it is kept together with the corresponding sources, inside the repository. Folder. This way docs are automatically in-sync with versions, and we can easily maintain documentation for different versions. If you feel that something is incomplete, can be improved or is just wrong, just open a pull request!
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projects - oh no sequences!
http://ohnosequences.com/projects
Era7 bioinformatics R&D group. A bacterial genome annotation system designed for NGS data. Published in PLoS One. UniprotKB GeneOntology NCBI taxonomy RefSeq Expasy Enzyme, integrated in a graph DB with easy AWS. A Scala library for working with modules with explicit dependencies, with some specifics for AWS, like declaring and applying immutable EC2 instance configurations. A Scala library designed for declaring and scaling stateless inherently parallel computations using AWS.
about - oh no sequences!
http://ohnosequences.com/about
Era7 bioinformatics R&D group. Is the research and development group at era7 bioinformatics. We’ve been doing a lot of R&D at era7 bioinformatics since the start of the company, but. As a group officially started at the spring of 2011. Since then, we’d. UniprotKB GeneOntology NCBI taxonomy RefSeq Expasy Enzyme, integrated in a graph DB with easy AWS. Our bacterial genome annotation system, designed from the ground up for NGS data. Released genomes, set up and coordinated the github repository. Is a well-...
About - Genome7
https://genome7.com/en/page.cfm?id=38&title=about
Genome7 is a Cancer Genomics solution designed by Era7 Bioinformatics. Genome7 is a Cancer Genomics solution that Era7 Bioinformatics. Has designed for your Next Generation Sequencing projects. After a long preparation, and taking advantage, among other things, of our successful project Bio4j. We can offer a new service based on a bioinformatics platform to provide a Next Step in Cancer Research. The distribution of Genome7 in Spain and Portugal will be carried out by COMERCIAL RAFER. Plaza Campo Verde 3.
GitHub - bio4j/bio4j: Bio4j abstract model and general entry point to the project
https://github.com/bio4j/bio4j
Bio4j abstract model and general entry point to the project. Http:/ www.bio4j.com. Use Git or checkout with SVN using the web URL. Aug 20, 2016. Failed to load latest commit information. Aug 20, 2016. Mar 5, 2016. Mar 9, 2016. Remove import code and obsolete vertices/edges files. Aug 20, 2016. Jul 29, 2014. Add a proper pullapprove config. Aug 13, 2016. Added Travis CI config. Mar 5, 2016. Removed all code; moved abstract part from bio4j/model; added sbt conf. Feb 12, 2014. Added codacy badge to readme.
INTERCROSSING - Selective sweep data and next generation sequence data analysis
http://intercrossing.wikispaces.com/Selective+sweep+data+and+next+generation+sequence+data+analysis
Skip to main content. Wikispaces Classroom is now free, social, and easier than ever. Try it today. Details of each project. Quantitative genetic analysis using genome wide data. Era7 Granada; Uni Grenoble). The effect of rare exonic variants on quantitative traits. PopGenTech Cambridge; Uni Grenoble). The interpretation of distribution of epigenetic modification. CLCbio Aarhus; Uni London). Genetic correlations and the analysis of complex traits. NPZ/Uni Giessen; Uni London. NHM London; Uni Vienna).
oh no sequences!
http://ohnosequences.com/blog
Era7 bioinformatics R&D group. Since we started working on Bio4j. And during all this time we have prioritized working on Bio4j over writing about (and publishing) what we were doing. Thanks in part to this, Bio4j 1.0 is going to be an amazing resource for the Bioinformatics community, built by only a handful of people; which I personally find quite impressive, given the scale and scope of the project. Well, this is no longer an issue: yesterday a preprint in the bioRxiv. Bio4j represents a unique resour...
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- bio4j
Bio4j is a bioinformatics graph data platform, integrating most data available in Uniprot KB. SwissProt Trembl), Gene Ontology. 50,90,100), NCBI Taxonomy. And Expasy Enzyme DB. Bio4j provides a completely new and powerful framework for protein related information querying and management. Ids in order to connect the different tuples; which can in some cases eventually lead to domain models that have almost nothing to do with the actual structure of data. For more, go to bio4j/bio4j. Bio4j is an open source.
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