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BioASP - Answer Set Programming for Systems Biology

Answer Set Programming for Systems Biology. BioASP is a meta-package to create an powerful environment of Answer Set Programming for Systems Biology. The BioASP applications implement methods for analyzing metabolic, signaling and gene regulatory networks, consistency checking, diagnosis, and repair of biological data and models. They allow for computing predictions and generating hypotheses about required extensions of biological models, as well as designing new experiments and finding intervent...For m...

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Answer Set Programming for Systems Biology. BioASP is a meta-package to create an powerful environment of Answer Set Programming for Systems Biology. The BioASP applications implement methods for analyzing metabolic, signaling and gene regulatory networks, consistency checking, diagnosis, and repair of biological data and models. They allow for computing predictions and generating hypotheses about required extensions of biological models, as well as designing new experiments and finding intervent...For m...

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Answer Set Programming for Systems Biology. BioASP is a meta-package to create an powerful environment of Answer Set Programming for Systems Biology. The BioASP applications implement methods for analyzing metabolic, signaling and gene regulatory networks, consistency checking, diagnosis, and repair of biological data and models. They allow for computing predictions and generating hypotheses about required extensions of biological models, as well as designing new experiments and finding intervent...For m...

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BioASP - Answer Set Programming for Systems Biology

http://bioasp.github.io/apps.html

Answer Set Programming for Systems Biology. The BioASP software collection includes the following applications. For more details on each application, please visit the corresponding. BioASP applications are freely available as python packages under General Public License (GPL) and they can be easily installed on your system. However you may want to try their. Before doing so (example input data is provided in-place). Reasoning on metabolic network models. Compute minimal metabolic precursors. Consistency ...

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caspo by bioasp

http://bioasp.github.io/caspo

Reasoning on the response of logical signaling networks with Answer Set Programming. Download .tar.gz. Reasoning on the response of logical signaling networks. Would allow for identifying admissible large-scale logic models saving a lot of efforts and without any a priori bias. Next, once a family a logical networks has been identified, one can suggest or design new experiments. In order to reduce the uncertainty provided by this family. Finally, one can look for intervention strategies. Learning Boolean...

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bioasp.github.io

BioASP - Answer Set Programming for Systems Biology

Answer Set Programming for Systems Biology. BioASP is a meta-package to create an powerful environment of Answer Set Programming for Systems Biology. The BioASP applications implement methods for analyzing metabolic, signaling and gene regulatory networks, consistency checking, diagnosis, and repair of biological data and models. They allow for computing predictions and generating hypotheses about required extensions of biological models, as well as designing new experiments and finding intervent...For m...

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