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View my complete profile. Tuesday, February 3, 2009. Data(hla.demo); attach(hla.demo). Print(geno.desc[c(1:10,80:85,135:140),]). Summary(save.em, nlines=7). Wednesday, January 28, 2009. Structure of gwaa.data. SNPs after 2,490,000 pb. The first 5 subject and 3 SNPs. Srdta[c("p141","p147","p2000"),]@phdata. Srdta[c("p141","p147","p2000"),c("rs10","rs29")]. The first character is the consensus. Homozygotes for the first character is "0". Convert data to the format for "genetics" library. Model = c("codomin...

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View my complete profile. Tuesday, February 3, 2009. Data(hla.demo); attach(hla.demo). Print(geno.desc[c(1:10,80:85,135:140),]). Summary(save.em, nlines=7). Wednesday, January 28, 2009. Structure of gwaa.data. SNPs after 2,490,000 pb. The first 5 subject and 3 SNPs. Srdta[c(p141,p147,p2000),]@phdata. Srdta[c(p141,p147,p2000),c(rs10,rs29)]. The first character is the consensus. Homozygotes for the first character is 0. Convert data to the format for genetics library. Model = c(codomin...

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Bioconductor | bioconductor-cahn.blogspot.com Reviews

https://bioconductor-cahn.blogspot.com

View my complete profile. Tuesday, February 3, 2009. Data(hla.demo); attach(hla.demo). Print(geno.desc[c(1:10,80:85,135:140),]). Summary(save.em, nlines=7). Wednesday, January 28, 2009. Structure of gwaa.data. SNPs after 2,490,000 pb. The first 5 subject and 3 SNPs. Srdta[c("p141","p147","p2000"),]@phdata. Srdta[c("p141","p147","p2000"),c("rs10","rs29")]. The first character is the consensus. Homozygotes for the first character is "0". Convert data to the format for "genetics" library. Model = c("codomin...

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Bioconductor: Affymetrix example: estrogen

http://www.bioconductor-cahn.blogspot.com/2007/10/affymetrix-example-estrogen.html

CDF data packages, probe-specific access. Cluster Analysis of Genomic Data. View my complete profile. Sunday, October 28, 2007. Hist(intensity(raw[,4]), breaks=100, col="blue"). Hist(log2(intensity(raw[,4]) , breaks=100, col="blue"). Boxplot(data.frame(exprs(norm) , col="blue"). Plot(exprs(raw)[,1:2], log="xy", pch=".", main="all"). Plot(pm(raw)[,1:2], log="xy", pch=".", main="pm"). Plot(mm(raw)[,1:2], log="xy", pch=".", main="pm"). Plot(exprs(norm)[,1:2], pch=".", main="normalized").

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Bioconductor: CDF data packages, probe-specific access

http://www.bioconductor-cahn.blogspot.com/2007/10/cdf-data-packages-probe-specific-access.html

CDF data packages, probe-specific access. Cluster Analysis of Genomic Data. View my complete profile. Sunday, October 28, 2007. CDF data packages, probe-specific access. Get gene names from a CDF file. Get a data with the 1st gene name. Read a CEL file. Subscribe to: Post Comments (Atom).

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Bioconductor: Cluster Analysis of Genomic Data

http://www.bioconductor-cahn.blogspot.com/2007/10/cluster-analysis-of-genomic-data.html

CDF data packages, probe-specific access. Cluster Analysis of Genomic Data. View my complete profile. Sunday, October 28, 2007. Cluster Analysis of Genomic Data. Pam() - Partitioning Around Medoids. Plot(part, which.plots=1, labels=3, col.clus=3, lwd=2, main="PAM"). Diana() - Divisive Hierarchical Algorithm. Plot(hier, which.plots=2, lwd=2, main="DIANA"). Agnes() - Agglomerative Hierarchical Algorithm. Subscribe to: Post Comments (Atom).

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Bioconductor: January 2009

http://www.bioconductor-cahn.blogspot.com/2009_01_01_archive.html

View my complete profile. Wednesday, January 28, 2009. Structure of gwaa.data. SNPs after 2,490,000 pb. The first 5 subject and 3 SNPs. Srdta[c("p141","p147","p2000"),]@phdata. Srdta[c("p141","p147","p2000"),c("rs10","rs29")]. The first character is the consensus. Homozygotes for the first character is "0". Convert data to the format for "genetics" library. Convert data to the format for "haplo.stats" library. Subscribe to: Posts (Atom).

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Bioconductor: October 2007

http://www.bioconductor-cahn.blogspot.com/2007_10_01_archive.html

CDF data packages, probe-specific access. Cluster Analysis of Genomic Data. View my complete profile. Sunday, October 28, 2007. Hist(intensity(raw[,4]), breaks=100, col="blue"). Hist(log2(intensity(raw[,4]) , breaks=100, col="blue"). Boxplot(data.frame(exprs(norm) , col="blue"). Plot(exprs(raw)[,1:2], log="xy", pch=".", main="all"). Plot(pm(raw)[,1:2], log="xy", pch=".", main="pm"). Plot(mm(raw)[,1:2], log="xy", pch=".", main="pm"). Plot(exprs(norm)[,1:2], pch=".", main="normalized"). Read a CEL file.

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cahn88.blogspot.com

cahn's home: Research

http://cahn88.blogspot.com/2007/10/sas-data-step.html

Sunday, October 21, 2007. Other than SAS and R. 작년 무렵에 통계에 관한 질문에 이은 답변에 이어 두번째 제 질문에 답을 주셨네요. 메일을 어떻게 보내는지 잘몰라서 그런데 메일 주소를 보내주시면 감사하겠습니다. July 16, 2009 at 10:06 AM. Scipio88@hanmail.net 입니다. 그럼 부탁드립니다. July 24, 2009 at 8:27 AM. Subscribe to: Post Comments (Atom). View my complete profile.

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cahn's home: October 2007

http://cahn88.blogspot.com/2007_10_01_archive.html

Sunday, October 21, 2007. Other than SAS and R. Subscribe to: Posts (Atom). View my complete profile.

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View my complete profile. Tuesday, February 3, 2009. Data(hla.demo); attach(hla.demo). Print(geno.desc[c(1:10,80:85,135:140),]). Summary(save.em, nlines=7). Wednesday, January 28, 2009. Structure of gwaa.data. SNPs after 2,490,000 pb. The first 5 subject and 3 SNPs. Srdta[c("p141","p147","p2000"),]@phdata. Srdta[c("p141","p147","p2000"),c("rs10","rs29")]. The first character is the consensus. Homozygotes for the first character is "0". Convert data to the format for "genetics" library. Model = c("codomin...

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