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BIOINF.FBB.MSU.RU

Bioinformatics Group of FBB MSU

Bioinformatics Group of FBB MSU. Andrey A. Mironov. Aleksandra B. Rakhmaninova. Mikhail S. Gelfand. Dmitri D. Pervouchine. SDPpred (Specificity-Determining Positions Prediction) Server [version 0.1]. Server for multiple alignment of RNA sequences. EDAS: EST Derived Alternative Splicing Database. Subscribe to Mironov group meeting.

http://bioinf.fbb.msu.ru/

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Bioinformatics Group of FBB MSU | bioinf.fbb.msu.ru Reviews
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Bioinformatics Group of FBB MSU. Andrey A. Mironov. Aleksandra B. Rakhmaninova. Mikhail S. Gelfand. Dmitri D. Pervouchine. SDPpred (Specificity-Determining Positions Prediction) Server [version 0.1]. Server for multiple alignment of RNA sequences. EDAS: EST Derived Alternative Splicing Database. Subscribe to Mironov group meeting.
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Bioinformatics Group of FBB MSU | bioinf.fbb.msu.ru Reviews

https://bioinf.fbb.msu.ru

Bioinformatics Group of FBB MSU. Andrey A. Mironov. Aleksandra B. Rakhmaninova. Mikhail S. Gelfand. Dmitri D. Pervouchine. SDPpred (Specificity-Determining Positions Prediction) Server [version 0.1]. Server for multiple alignment of RNA sequences. EDAS: EST Derived Alternative Splicing Database. Subscribe to Mironov group meeting.

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edas2.bioinf.fbb.msu.ru edas2.bioinf.fbb.msu.ru

EDAS2 - Alternative Splicing DataBase.

EDAS: EST Derived Alternative Splicing Database. Ramil N. Nurtdinov. Alexey D. Neverov. Andrey A. Mironov. Mikhail S. Gelfand. Bull;Department of Bioengineering and Bioinformatics, Moscow State University. Bull;State Scientific Center GosNIIGenetika. Bull;Institute for Information Transmission Problems RAS. To navigate this site please install the latest version of Macromedia Flash Player for Windows. If you do not wish to install Flash you could use text pages with less functionality.

affymetrix2.bioinf.fbb.msu.ru affymetrix2.bioinf.fbb.msu.ru

PLANdbAffy: probe-level annotation database for Affymetrix expression microarrays

PLANdbAffy: probe-level annotation database for Affymetrix expression microarrays. Jim Kent's page (BLAT). Bull; Affymetrix probe set identifier. Example: "200034 s at". Affy probe set ID. Bull; NCBI Entrez Gene identifier. Bull; ENSEMBL gene identifier. Bull; HUGO gene identifier. Bull; Gene official symbol. Bull; Word or phrase in gene official name. Please use the following reference when citing PLANdbAffy. Nurtdinov RN*, Vasiliev MO, Ershova AS, Lossev IS, Karyagina AS.

INTERNAL PAGES

bioinf.fbb.msu.ru bioinf.fbb.msu.ru
1

SDPlight

http://bioinf.fbb.msu.ru/SDPfoxWeb

SDPfox - the fast tool for the prediction of functional specificity groups and amino acid residues that determine the specificity using MPA. Algorithm and format requirements. That allows for ab initio specificity prediction. Paste your alignment into the form below (fasta and gde formats, see example. Or load it from file:. Select the maximum allowed percent of gaps in a group in each column:. To get help, run java -jar SDPfox.jar.

2

Prot-DNA-Korr: main page

http://bioinf.fbb.msu.ru/Prot-DNA-Korr

Prot-DNA-Korr is a tool for studying sequence correlations between DNA-binding proteins and their binding sites. The program searches for such pairs of positions in alignments of proteins and their binding sites that demonstrate correlations between amino acid residues and bases. Such pairs (we call them correlated pairs) may play a biological role in specific 'protein'-'nucleic acid' binding. In particular they may form a specific contacts, which allows the protein to recognize binding sites.

3

Site Cluster

http://bioinf.fbb.msu.ru/RNAAlign

RNA Align: Alignment of RNA. And conservative secondary structure prediction. Builds multiple alignment of conservative blocks and find consistent sets of helices. The input data may contain junk sequences. Department of Department of Bioengineering and Bioinformatics, MSU, Moscow, Russia. Mail to Andrey Mironov.

4

RNA Kinetics main page

http://bioinf.fbb.msu.ru/RNA/kinetics

Ludmila V. Danilova 1, Dmitri D. Pervouchine 2,3,. Alexander V. Favorov 4, and Andrei A. Mironov 2,4. 1 Institute for Information Transmition Problems RAS, Bolshoi Karetnyi per. 19, Moscow, 127994, Russia. 2 Dept. of Bioengineering and Bioinformatics, Moscow State University, Lab. Bldg B, Vorobiovy Gory 1-73, Moscow 119992, Russia. 3 Center for BioDynamics, Boston University, 111 Cummington street, Boston, MA 02215, USA. Mail to Ludmila Danilova.

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Bioinformatics Group of FBB MSU

Bioinformatics Group of FBB MSU. Andrey A. Mironov. Aleksandra B. Rakhmaninova. Mikhail S. Gelfand. Dmitri D. Pervouchine. SDPpred (Specificity-Determining Positions Prediction) Server [version 0.1]. Server for multiple alignment of RNA sequences. EDAS: EST Derived Alternative Splicing Database. Subscribe to Mironov group meeting.

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