bioinfo.lifl.fr

bioinfo.lifl.fr - Bonsai Bioinformatics

Bonsai : Bioinformatics Software Server. The BONSAI research group. Provides a wide range of bioinformatics software dedicated to biological sequence analysis. Program tools are available for download and/or through user-friendly web interfaces. Genome comparison, homology search, gene prediction, genome structure. DNA-seq, RNA-seq, metatranscriptome, metagenome. Transcription factor binding sites, transcriptional regulation. Noncoding RNA, RNA secondary structure, comparison and alignment, miRNA.

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bioinfo.lifl.fr - Bonsai Bioinformatics | bioinfo.lifl.fr Reviews

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Bonsai : Bioinformatics Software Server. The BONSAI research group. Provides a wide range of bioinformatics software dedicated to biological sequence analysis. Program tools are available for download and/or through user-friendly web interfaces. Genome comparison, homology search, gene prediction, genome structure. DNA-seq, RNA-seq, metatranscriptome, metagenome. Transcription factor binding sites, transcriptional regulation. Noncoding RNA, RNA secondary structure, comparison and alignment, miRNA.

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1 yass

2 magnolia

3 procars

4 high throughput sequencing

5 sortmerna

6 vidjil

7 matam

8 dinamo

9 crac

10 storm

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yass,magnolia,procars,high throughput sequencing,sortmerna,vidjil,matam,dinamo,crac,storm,transcription factor matrices,tfm explorer,tfm scan,tfm pvalue,tfm cuda,carnac,mirkwood,gardenia,rnaspace,regliss,cg seq,proteins,path,protea,reblosum,norine

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bioinfo.lifl.fr - Bonsai Bioinformatics | bioinfo.lifl.fr Reviews

https://bioinfo.lifl.fr

Bonsai : Bioinformatics Software Server. The BONSAI research group. Provides a wide range of bioinformatics software dedicated to biological sequence analysis. Program tools are available for download and/or through user-friendly web interfaces. Genome comparison, homology search, gene prediction, genome structure. DNA-seq, RNA-seq, metatranscriptome, metagenome. Transcription factor binding sites, transcriptional regulation. Noncoding RNA, RNA secondary structure, comparison and alignment, miRNA.

INTERNAL PAGES

bioinfo.lifl.fr

1

Bonsai :: Bioinformatics Software Server

http://bioinfo.lifl.fr/CGseq

Is a software pipeline to identify noncoding RNAs in a genomic sequence by comparative analysis and multispecies comparison. It takes as input a genomic sequence (called the target sequence) and a set of other sequences coming from a variety of species to be compared against the target sequences. The algorithm of CG-seq proceeds in four steps. Sequences are preprocessed to mask CDSs, or to remove redundancy between strains coming from the same species (optional). Load the target sequence.

2

CRAC

http://bioinfo.lifl.fr/crac

Proposes a novel way of analyzing reads that integrates genomic locations and local coverage, and delivers all above mentioned predictions in a single step. CRAC uses a double k-mer profiling approach to detect candidate mutations, indels, splice or fusion junctions in each single read. CRAC is released under a CECiLL licence (a GPL-compliant licence). CRAC: an integrated approach to the analysis of RNA-seq reads. And Léonard M. Querying large read collections in main memory : a versatile data structure.

3

Bonsai :: Bioinformatics Software Server

http://bioinfo.lifl.fr/yass/iedera_solid/storm

SToRM is a software tool primarily proposed for mapping Illumina or SOLiD reads to a reference genome. It is based on seeding techniques adapted to the statistical characteristics of the reads: the seeds are designed (using the Iedera. Software) to comply with the properties of the Illumina base encoding, or the SOLiD color encoding, and the observed reading error distribution. More information and examples can be found,. For Illumina, in the enclosed README file provided with the sources,. Svn checkout ...

4

Bonsai :: Bioinformatics Software Server

http://bioinfo.lifl.fr/RNA/RNAfamily/rnafamily.php

RNAfamily is a simple software tools that enables to display all secondary structures of a family of RNA molecules. It uses the linear backbone representation. RNAfamily provides usual graphical features: zooming, scrolling, etc. Colors of the stems correspond to matching stems. It is also possible to display the nucleotides composing a stem or the whole sequence. RNAfamily may be used a stand-alone Java program: download RNAfamily. For questions about RNAfamily. Or for bug reports, please contact.

5

Bonsai :: Bioinformatics Software Server

http://bioinfo.lifl.fr/procars

Is a program used to reconstruct Ancestral gene orders as CARs. Contiguous Ancestral Regions) with a progressive homology-based method. The method runs from a phylogeny tree (without branch lengths needed) with a marked ancestor and a block file. This homology-based method is based on iteratively. Detecting and assembling ancestral adjacencies, while allowing some micro-rearrangements of synteny blocks at the extremities of the progressively assembled CARs. Has been developed with Python 2.7.5. You can d...

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lifl.fr

start [Bonsai]

http://www.lifl.fr/bonsai

Some of our projects. We are a bioinformatics research group affiliated with INRIA Lille - Nord Europe. And the Centre de Recherche en Informatique, Signal et Automatique de Lille. CRIStAL, Université Lille 1. See our software server. Our Inria activity report. And the list of publications. 2 PhD grants are available. On the subject on algorithms for high-throughput sequencing data (deadline: April 15). October 28-30: Bioinformatics tools for NRPS discovery, From genomic data to the products. Classificat...

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OTHER SITES

bioinfo.lab.mcgill.ca

Computational Structural & Systems Biology - Yu (Brandon) Xia Lab - McGill University

Yu (Brandon) Xia Lab. Computational Structural and Systems Biology. The Xia lab is in the Department of Bioengineering. Focuses on computer modeling and analysis of protein structures. Ongoing projects in the lab include: prediction of protein three-dimensional structure and function, modeling protein sequence-structure-function relationships. Molecular and Network Evolution. Bioinformatics Algorithms and Applications. Yu (Brandon) Xia Lab Department of Bioengineering McGill University.

bioinfo.lbhc.hcancer.org.br

LBHC : Home

Laboratorio de Biotecnologia do Hospital do Câncer. Ramal 1134 - suporte at lbhc.hcancer.org.br.

bioinfo.life-bio.kansai-u.ac.jp

環境微生物工学研究室 - 関西大学化学生命工学部生命・生物工学科

これら微生物はさまざまな能力を有しており、その能力は環境食品医薬品化成品などの分野に広く利用されています。 Journal of Bacteriology誌 Volume 189, Issue 9 (2007) に掲載された当研究室の共同研究成果が、雑誌の表紙に採用されました。 Journal of the American Chemical Society誌. Volume 131, Issue 25 (2009) に掲載された. Applied and Environmental Microbiology誌. Applied and Environmental Microbiology誌.

bioinfo.life.hust.edu.cn

An-Yuan Guo's Bioinformatics Laboratory

Welcome to An-Yuan Guo's Bioinformatics Lab. An-Yuan Guo, PhD. Department of Systems Biology, College of Life Science and Technology. Huazhong University of Science and Technology, WuHan, China. 1) Large-scale data integration using bioinformatics approaches to explore molecular mechanisms of complex diseases and biological processes, including data integration, database construction, high-throughput data analysis, and disease gene analysis. 2) microRNA gene regulatory network in complex diseases.

bioinfo.life.nthu.edu.tw

清華大學生物資訊中心Bioinformatics Center, NTHU

Value-added databases and analysis server. CPred http:/ sarst.life.nthu.edu.tw/CPred/. Customized Service- Structural Bioinformatics. Since May 2011, we provide customized data analysis services, which is a more comprehensive service depending on the research needs. Last updated Best resolution above 1024*768. 101, Section 2, Kuang-Fu Road, Hsinchu, Taiwan 30013. TEL: 886-3-5715131-33489 / FAX: 886-3-5715934. If you have any question, please feel free to e-mail.

bioinfo.lifl.fr

bioinfo.lifl.fr - Bonsai Bioinformatics

Bonsai : Bioinformatics Software Server. The BONSAI research group. Provides a wide range of bioinformatics software dedicated to biological sequence analysis. Program tools are available for download and/or through user-friendly web interfaces. Genome comparison, homology search, gene prediction, genome structure. DNA-seq, RNA-seq, metatranscriptome, metagenome. Transcription factor binding sites, transcriptional regulation. Noncoding RNA, RNA secondary structure, comparison and alignment, miRNA.

bioinfo.lnx.biu.ac.il

Generic Genome Browser

Generic Genome Browser, v2. Welcome to the Generic Genome Browser! Online tutorial and sample data files. Installation and configuration manual. GBrowse 2.0 HOWTO. Example scripts to control GBrowse from the command line. Example in-memory databases from yeast chromosomes 1 and 2 have been installed for you. Try them at these URL:. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast advanced. Http:/ your.host/cgi-bin/gb2/gbrowse/yeast renderfarm. Http:/ your.host/gb2/gbrowse/yeast advanced. To find out more about...

bioinfo.loria.fr

BioinfoLorraine | Main >> HomePage

2006-2014: The MBI Project. The value of $ COOKIE['userlang'] is: en. Welcome to bioinfo.loria.fr - the portal for bioinformatics research at the University of Lorraine! This new site is under construction. Page last modified on March 16, 2015, at 11:51 AM.

bioinfo.lri.fr

LRI - BioInfo

BioInfo group at LRI, Orsay (France). Welcome to our BioInfo group webpage. We are located at LRI. Laboratoire de Recherche en Informatique, UMR CNRS 8623, Université Paris-Sud) in Orsay, France. Labex It has close collaborations with the Bio-Informatique Moléculaire. Its scientific programme is structured into two themes: Structural bioinformatics. And Systems biology and Data integration. Lab access indications on LRI website.

bioinfo.lv

Bioloģiskās Saimniecības Latvijā

Sveicināti, anonīmais apmeklētāj! Kā iegādāties bioloģisko pārtiku no vietējiem zemniekiem? Noderīga lasāmviela brīvākiem brīžiem. Publikācijas par bioloģisko saimniekošanu. Ērti uzzināt par Latvijas zemnieku saimniecībām, pārstrādātājiem un tirgotājiem, kuri piedāvā sertificētu bioloģisko pārtiku. Pircējiem, eko veikaliem, sabiedriskās ēdināšanas iestādēm un pārstrādātājiem viegli atrast Latvijā audzētas bioloģiskās pārtikas izejvielas un produktus. Kāpēc izvēlēties bioloģisko pārtiku?

bioinfo.matf.bg.ac.rs

Bioinformatics Research Group