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RunIprScan | Michael R. Thon
http://michaelrthon.com/runiprscan
Michael R. Thon. RunIprScan is a command line utility for scanning protein sequences with InterProScan. You don’t need to install InterProScan to use it. The protein sequences are sent to the European Bioinformatics Institute’s web service where they are processed on the EBI’s compute cluster, returning the scan results in xml format and in a tab delimited table suitable for importing into a spreadsheet. Download now: RunIprScan-1.1.0. 100 Nov. 2, 2011. Initial release. Blog posts by category.
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February | 2014 | Michael R. Thon
http://michaelrthon.com/2014/02
Michael R. Thon. Monthly Archives: February 2014. Geneious plugin sources are now on Bitbucket. I just released my source code for two Geneious plugins, InterProScan. This entry was posted in Uncategorized. February 8, 2014. Http:/ bioinformatica.vil.usal.es. Blog posts by category. Proudly powered by WordPress.
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InterProScan Plugin for Geneious | Michael R. Thon
http://michaelrthon.com/geneious-interproscan-plugin
Michael R. Thon. InterProScan Plugin for Geneious. The Geneious InterProScan Plugin enables you to run InterProScan from within the Geneious application. First, a few definitions. InterPro. Is a database of protein families and domains that was developed by the European Bioinformatics Institute. InterPro integrates many of the most popular protein family and domain databases such as PFAM and PRODOM together into one federated database. InterProScan. This plugin submits protein sequences to the InterProSc...
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May | 2013 | Michael R. Thon
http://michaelrthon.com/2013/05
Michael R. Thon. Monthly Archives: May 2013. Reproducibility: Six red flags for suspect work : Nature : Nature Publishing Group. May 27, 2013. Simplify Your Life With an SSH Config File : Nerderati. May 1, 2013. Http:/ bioinformatica.vil.usal.es. Blog posts by category. Proudly powered by WordPress.
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App Development | Michael R. Thon
http://michaelrthon.com/category/app-development
Michael R. Thon. Category Archives: App Development. Simplify Your Life With an SSH Config File : Nerderati. May 1, 2013. Average App Store Review Times. Unfortunately it looks like Mac App Store review times are going up again…. Average App Store Review Times. This entry was posted in App Development. April 1, 2013. Http:/ bioinformatica.vil.usal.es. Blog posts by category. Proudly powered by WordPress.
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June | 2013 | Michael R. Thon
http://michaelrthon.com/2013/06
Michael R. Thon. Monthly Archives: June 2013. Declining Fruit and Vegetable Nutrient Composition: What Is the Evidence? June 17, 2013. Spray, Poison, Eat: Glyphosate (Roundup) In Our Food By Colin Todhunter. June 16, 2013. Http:/ bioinformatica.vil.usal.es. Blog posts by category. Proudly powered by WordPress.
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December | 2012 | Michael R. Thon
http://michaelrthon.com/2012/12
Michael R. Thon. Monthly Archives: December 2012. Developing Geneious plugins with NetBeans. This guide assumes that you are already somewhat familiar with NetBeans and the Apache ant build tool. Start NetBeans. From the new project window select Java Free-Form Project. Build And Run Options: The next screen lets you map buttons in the NetBeans toolbar to targets in the build.xml file. the build and clean buttons should already be mapped. We’ll set up the other buttons later. Click Next. Project Output: ...
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Augustus Plugin for Geneious | Michael R. Thon
http://michaelrthon.com/augustus-plugin-for-geneious
Michael R. Thon. Augustus Plugin for Geneious. The Augustus plugin for Geneious lets you run Augustus. An ab initio gene prediction program for eukaryotic DNA sequences. This plugin is in an early stage of development but the basic functionality is there: you can select a species from a list of pre-trained species and obtain a set of gene annotations for your genomic DNA sequences. You can follow the development on Bitbucket. 3 thoughts on “ Augustus Plugin for Geneious. August 11, 2014 at 11:14 pm.
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March | 2013 | Michael R. Thon
http://michaelrthon.com/2013/03
Michael R. Thon. Monthly Archives: March 2013. I had no idea this still exists…. Manton Reece just posted a comment. Here’s the original article: Macworld – Hotline Revisited. This entry was posted in Mac. March 31, 2013. Http:/ bioinformatica.vil.usal.es. Blog posts by category. Proudly powered by WordPress.
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April | 2013 | Michael R. Thon
http://michaelrthon.com/2013/04
Michael R. Thon. Monthly Archives: April 2013. Is it me or does this sound like a really, really bad idea? US Lawmaker Proposes New Criteria for Choosing NSF Grants – ScienceInsider. April 30, 2013. Average App Store Review Times. Unfortunately it looks like Mac App Store review times are going up again…. Average App Store Review Times. This entry was posted in App Development. April 1, 2013. Http:/ bioinformatica.vil.usal.es. Blog posts by category. Proudly powered by WordPress.