bioinformatics-cahn.blogspot.com

Bioinformatics

Friday, August 7, 2009. EM - algorithm: LD. Cbind(pAB,pAb,paB,pab); pAB pAb paB pab;. 2*tt[1,1] tt[1,2] tt[2,1] tt[2,2]*(pAB*pab)/(pAB*pab paB*pAb). 2*tt[1,3] tt[1,2] tt[2,3] tt[2,2]*(paB*pAb)/(pAB*pab paB*pAb). 2*tt[3,1] tt[3,2] tt[2,1] tt[2,2]*(paB*pAb)/(pAB*pab paB*pAb). 2*tt[3,3] tt[3,2] tt[2,3] tt[2,2]*(pAB*pab)/(pAB*pab paB*pAb). EM - algorithm: ABO. Cbind(Naa,Nao,Nbb,Nbo,Nab,No). Saturday, October 27, 2007. More than 99% of human DNA sequences are the same across the population. C: the number of c...

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Friday, August 7, 2009. EM - algorithm: LD. Cbind(pAB,pAb,paB,pab); pAB pAb paB pab;. 2*tt[1,1] tt[1,2] tt[2,1] tt[2,2]*(pAB*pab)/(pAB*pab paB*pAb). 2*tt[1,3] tt[1,2] tt[2,3] tt[2,2]*(paB*pAb)/(pAB*pab paB*pAb). 2*tt[3,1] tt[3,2] tt[2,1] tt[2,2]*(paB*pAb)/(pAB*pab paB*pAb). 2*tt[3,3] tt[3,2] tt[2,3] tt[2,2]*(pAB*pab)/(pAB*pab paB*pAb). EM - algorithm: ABO. Cbind(Naa,Nao,Nbb,Nbo,Nab,No). Saturday, October 27, 2007. More than 99% of human DNA sequences are the same across the population. C: the number of c...

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4 ld actn3snp2 actn3snp3

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Bioinformatics | bioinformatics-cahn.blogspot.com Reviews

https://bioinformatics-cahn.blogspot.com

Friday, August 7, 2009. EM - algorithm: LD. Cbind(pAB,pAb,paB,pab); pAB pAb paB pab;. 2*tt[1,1] tt[1,2] tt[2,1] tt[2,2]*(pAB*pab)/(pAB*pab paB*pAb). 2*tt[1,3] tt[1,2] tt[2,3] tt[2,2]*(paB*pAb)/(pAB*pab paB*pAb). 2*tt[3,1] tt[3,2] tt[2,1] tt[2,2]*(paB*pAb)/(pAB*pab paB*pAb). 2*tt[3,3] tt[3,2] tt[2,3] tt[2,2]*(pAB*pab)/(pAB*pab paB*pAb). EM - algorithm: ABO. Cbind(Naa,Nao,Nbb,Nbo,Nab,No). Saturday, October 27, 2007. More than 99% of human DNA sequences are the same across the population. C: the number of c...

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bioinformatics-cahn.blogspot.com

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Bioinformatics: Normalization

http://www.bioinformatics-cahn.blogspot.com/2007/10/normalization.html

Saturday, October 27, 2007. Background Correction (Oligonucleotide arrays). The array is split into 16 rectangular zones. Zone background is chosen to be the lowest 2% of intensities in each zone. The background for each of the probes is computed as weighted sum of backgrounds of all zones. The corrected probe balues can be calculated by subtracting the background. Subscribe to: Post Comments (Atom). Comparison Analysis (Experimental vs Baseline arra. Single Array Analysis (Oilgonucleotide expression .

2

Bioinformatics: Twin Study

http://www.bioinformatics-cahn.blogspot.com/2007/10/twin-study.html

Saturday, October 27, 2007. C: the number of concordant pairs. D: the number of discordant pairs. Pairwise concordance = C/(C D). Probandwise concordance = 2C/(2C D). Subscribe to: Post Comments (Atom). Comparison Analysis (Experimental vs Baseline arra. Single Array Analysis (Oilgonucleotide expression . View my complete profile.

3

Bioinformatics: Pedigree Analysis

http://www.bioinformatics-cahn.blogspot.com/2007/10/pedigree-analysis.html

Saturday, October 27, 2007. Generate an example data. Make it a data frame. Subscribe to: Post Comments (Atom). Comparison Analysis (Experimental vs Baseline arra. Single Array Analysis (Oilgonucleotide expression . View my complete profile.

4

Bioinformatics: October 2007

http://www.bioinformatics-cahn.blogspot.com/2007_10_01_archive.html

Saturday, October 27, 2007. More than 99% of human DNA sequences are the same across the population. It must occur in at least 1% of the population. SNPs, which make up about 90% of all human genetic variation, occur every 100 to 300 bases along the 3-billion-base human genome. Two of every three SNPs involve the replacement of cytosine (C) with thymine (T). SNPs can occur in both coding (gene) and noncoding regions of the genome. Background Correction (Oligonucleotide arrays). Generate an example data.

5

Bioinformatics: EM - algorithm: ABO

http://www.bioinformatics-cahn.blogspot.com/2009/08/em-algorithm-abo.html

Friday, August 7, 2009. EM - algorithm: ABO. Cbind(Naa,Nao,Nbb,Nbo,Nab,No). Subscribe to: Post Comments (Atom). EM - algorithm: LD. EM - algorithm: ABO. View my complete profile.

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cahn88.blogspot.com

cahn's home: Research

http://cahn88.blogspot.com/2007/10/sas-data-step.html

Sunday, October 21, 2007. Other than SAS and R. 작년 무렵에 통계에 관한 질문에 이은 답변에 이어 두번째 제 질문에 답을 주셨네요. 메일을 어떻게 보내는지 잘몰라서 그런데 메일 주소를 보내주시면 감사하겠습니다. July 16, 2009 at 10:06 AM. Scipio88@hanmail.net 입니다. 그럼 부탁드립니다. July 24, 2009 at 8:27 AM. Subscribe to: Post Comments (Atom). View my complete profile.

cahn88.blogspot.com

cahn's home: October 2007

http://cahn88.blogspot.com/2007_10_01_archive.html

Sunday, October 21, 2007. Other than SAS and R. Subscribe to: Posts (Atom). View my complete profile.

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Friday, August 7, 2009. EM - algorithm: LD. Cbind(pAB,pAb,paB,pab); pAB pAb paB pab;. 2*tt[1,1] tt[1,2] tt[2,1] tt[2,2]*(pAB*pab)/(pAB*pab paB*pAb). 2*tt[1,3] tt[1,2] tt[2,3] tt[2,2]*(paB*pAb)/(pAB*pab paB*pAb). 2*tt[3,1] tt[3,2] tt[2,1] tt[2,2]*(paB*pAb)/(pAB*pab paB*pAb). 2*tt[3,3] tt[3,2] tt[2,3] tt[2,2]*(pAB*pab)/(pAB*pab paB*pAb). EM - algorithm: ABO. Cbind(Naa,Nao,Nbb,Nbo,Nab,No). Saturday, October 27, 2007. More than 99% of human DNA sequences are the same across the population. C: the number of c...

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