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Idibaps Bioinformatics platform

NGS Analysis Journal Clubs. Data analysis pipelines in. NGS, CEK-IDIBAPS Seminars. Javier Santoyo, March 14th. IDIBAPS Bioinformatics Platform , 2016.

http://bioinformatics.idibaps.org/

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Idibaps Bioinformatics platform | bioinformatics.idibaps.org Reviews
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Idibaps Bioinformatics platform | bioinformatics.idibaps.org Reviews

https://bioinformatics.idibaps.org

NGS Analysis Journal Clubs. Data analysis pipelines in. NGS, CEK-IDIBAPS Seminars. Javier Santoyo, March 14th. IDIBAPS Bioinformatics Platform , 2016.

INTERNAL PAGES

bioinformatics.idibaps.org bioinformatics.idibaps.org
1

Tools of idibaps Bioinformatics Platform

http://bioinformatics.idibaps.org/bioinformatics/Tools.htm

Of AMarge quality control of CEL files. Latest version of annotation R packages have been installed. AMarge quality control of CEL files. Detection of possible outliers and derivation of Expression Values. Developed in collaboration with CRG Microarray Lab. Are part of a set of tools for the Integration and Management of OMICS Information develoved within the framework of the BioBridge. EMI ANALYSIS OF EXPRESSION MATRICES. First steps into the analysis of expression matrices focused on correlation. Is a ...

2

Equipment

http://bioinformatics.idibaps.org/bioinformatics/equipment.htm

2 rack Servers HP ProLiant DL580 G7 4P Intel Xeon E7-4870 10-cores, 2,40GHz, Hyper-Threading Technology (80 threads per node), 30 MB CPU cache, 192 GB RAM. Intel Hard disk: 2 x 300 GB 6G SAS 10K SFF. O.S.: 64b Suse Linux Enterprise Server configured with SGE System (Sun Grid Engine). IBM eServer BladeCenter HS21 Server. 1P Intel Xeon E5-354 4-cores, 2,33 GHz. 8MB CPU cache, 16 GB RAM. Internal Hard disk: 500 GB (Raid 5). O.S.: 64b Suse Linux Enterprise Server. External SAS storage HP MSA60, 8TB 2U Serial...

3

EMI - Expression Matrices Insights

http://bioinformatics.idibaps.org/correlation

CORRELATION ALL VS ALL. CORRELATION ONE VS ALL.

4

Courses and Seminars

http://bioinformatics.idibaps.org/bioinformatics/Courses.htm

Courses and Seminars organized by the Bioinformatics Platform. January 15th 2014, CEK-IDIBAPS, Bcn. IDIBAPS CORE FACILITY SEMINAR: "Datos OMICS de distintas plataformas tecnologicas: tratamiento e integracion bioinformatica" Dra. Kalko. IDIBAPS WINTER SEMINARS 2014. Winter 2012 - 2013 - CEK-IDIBAPS, BCN. NGS Analysis Journal Clubs. Wednesday, 17th October 2012. Wednesday, 21st November 2012. Wednesday, 12th December 2012. Wednesday, 29th May 2013. 19th June 2012 - BCN, Data analysis challenges with NGS.

5

transGP

http://bioinformatics.idibaps.org/anntools/transgp.php

Input file (query is case insensitive):. Your target genes ID column:. Your target genes ID type:. Gene title or target description. Annotation ( Affymetrix release 32. Data sources info). HG-U133 Plus 2 na32. Gene Ontology Biological Process. Gene Ontology Molecular Function. Gene Ontology Cellular Component. Preserve head of annotation columns? Contact for mail alert:.

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Idibaps Bioinformatics platform

NGS Analysis Journal Clubs. Data analysis pipelines in. NGS, CEK-IDIBAPS Seminars. Javier Santoyo, March 14th. IDIBAPS Bioinformatics Platform , 2016.

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